trnas-uga_9


Basic Information

Item Value
gene id trnas-uga_9
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 18936889 ~ 18936970 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnas-uga_9
GCTGTGATGGCCGAGTGGTTAAGGCGTTGGACTTGAAATCCAATGGGGTCTCCCCGCGCAGGTTCGAACCCTGCTCGCAGCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnas-uga_9 True 82 tRNA 0.61 1 18936889 18936970

Neighbor

gene id symbol gene type direction distance location
trnas-uga_8 NA coding upstream 901 18935907 ~ 18935988 (+)
trnas-uga_7 NA coding upstream 1211 18935597 ~ 18935678 (+)
trnas-uga_6 NA coding upstream 1676 18935132 ~ 18935213 (+)
trnas-cga_2 NA coding upstream 1924 18934884 ~ 18934965 (+)
plpp5 plpp5,LOC108440555 coding upstream 30700 18900339 ~ 18906189 (+)
trim69 LOC108276850,LOC108440158,LOC103027413,LOC107746217,LOC107658579,LOC107688998 coding downstream 11928 18948898 ~ 18958044 (+)
aak1b aak1b,LOC108276848,LOC108440145,LOC107689018 coding downstream 46163 18983133 ~ 19010793 (+)
LOC117599383 LOC108277332,LOC108440140 coding downstream 131236 19068206 ~ 19073060 (+)
LOC113544111 LOC108277332 coding downstream 145551 19082521 ~ 19101181 (+)
ddhd2 LOC108276773 coding downstream 166223 19103193 ~ 19119113 (+)
G271554 NA non-coding upstream 2749 18933911 ~ 18934140 (+)
G271552 NA non-coding upstream 5834 18929522 ~ 18931055 (+)
G271550 NA non-coding upstream 12818 18923815 ~ 18924071 (+)
G271548 NA non-coding upstream 13306 18923364 ~ 18923583 (+)
G271545 NA non-coding upstream 17422 18918594 ~ 18919467 (+)
G271555 pcna,LOC107658578,LOC107688976,LOC107583397 non-coding downstream 573 18937543 ~ 18940887 (+)
G271557 NA non-coding downstream 5787 18942757 ~ 18943019 (+)
G271540 NA non-coding downstream 21198 18958168 ~ 18960267 (+)
G271568 NA non-coding downstream 23558 18960528 ~ 18960767 (+)
G271569 NA non-coding downstream 24332 18961302 ~ 18961555 (+)
G271406 NA other upstream 529391 18404269 ~ 18407498 (+)
si:ch73-234b20.5 LOC108276836,LOC108440734 other upstream 1835820 17099096 ~ 17101069 (+)
trnam-cau_42 NA other upstream 1847511 17089307 ~ 17089378 (+)
trnar-ccu_13 NA other upstream 1847590 17089227 ~ 17089299 (+)
trnam-cau_41 NA other upstream 1848289 17088529 ~ 17088600 (+)
G271863 NA other downstream 304739 19241709 ~ 19243905 (+)
LOC113544086 LOC108261382,LOC108276944,LOC108262018 other downstream 439122 19376092 ~ 19414627 (+)
LOC113544004 LOC108276941 other downstream 552236 19489206 ~ 19520777 (+)
LOC113543969 NA other downstream 845457 19782427 ~ 19786831 (+)
G272180 NA other downstream 856942 19793912 ~ 19825232 (+)

Expression


Co-expression Network