trnat-agu_11


Basic Information

Item Value
gene id trnat-agu_11
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 1095601 ~ 1095674 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnat-agu_11
GGCGCCGTGGCTTAGTTGGTTAAAGCGCCTGTCTAGTAAACAGGAGATCctgggttcgaatcccagcGGTGCCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnat-agu_11 True 74 tRNA 0.57 1 1095601 1095674

Neighbor

gene id symbol gene type direction distance location
ap4m1 ap4m1,LOC107702797,LOC107720677,LOC107554303,LOC107742404 coding downstream 5070 1081869 ~ 1090531 (-)
foxo1b LOC108277356 coding downstream 14312 1052951 ~ 1081289 (-)
LOC113524167 thap12 coding downstream 89398 999241 ~ 1006203 (-)
si:dkey-250d21.1 LOC108276748,LOC108442106 coding downstream 98806 987090 ~ 996795 (-)
wnt11 wnt11,wnt11r,LOC107686210,LOC107589704,LOC107751408,LOC107747044 coding downstream 134787 940503 ~ 960814 (-)
trnas-gcu_6 NA coding upstream 2124 1097798 ~ 1097879 (-)
LOC113524202 NA coding upstream 2503 1098177 ~ 1098309 (-)
tmem88a tmem88,LOC108276534,LOC106608829,LOC106525123 coding upstream 32905 1128579 ~ 1134162 (-)
kdm6bb kdm6b,LOC108277160,LOC105902372 coding upstream 43205 1138879 ~ 1159183 (-)
efnb3a LOC108277042 coding upstream 108158 1203832 ~ 1230875 (-)
G261676 NA non-coding downstream 41578 969913 ~ 1054023 (-)
G261686 NA non-coding downstream 97300 997641 ~ 998301 (-)
G261355 NA non-coding downstream 219824 657927 ~ 875777 (-)
LOC113524153 NA non-coding upstream 136689 1232363 ~ 1235521 (-)
G261748 NA non-coding upstream 227506 1323180 ~ 1323407 (-)
G261753 NA non-coding upstream 232897 1328571 ~ 1328776 (-)
G261758 NA non-coding upstream 239066 1334740 ~ 1334940 (-)
G261759 NA non-coding upstream 264465 1360139 ~ 1360361 (-)
LOC117599327 NA other downstream 63066 981406 ~ 1032535 (-)
si:ch211-266i6.3 LOC108276750 other downstream 81312 1006914 ~ 1014289 (-)
fhl1b fhl1b,LOC108444522,LOC107718794,LOC107701105,LOC107693928,LOC107548848 other downstream 779276 301010 ~ 316325 (-)
nlgn2b nlgn2,LOC108277041,LOC108443341,LOC107678031,LOC107720555,LOC107554306 other upstream 169778 1265452 ~ 1410939 (-)
G261868 LOC108276666,LOC108277182,LOC108277183,LOC108276665,LOC108277185 other upstream 679887 1775561 ~ 1780407 (-)
si:ch73-1a9.3 NA other upstream 1584001 2679675 ~ 2760185 (-)
LOC113544801 LOC108276863,LOC108433269 other upstream 1616768 2712442 ~ 2724473 (-)
LOC113544717 LOC108276916,LOC108276915 other upstream 1869981 2965655 ~ 2968182 (-)

Expression


Co-expression Network