G299482


Basic Information

Item Value
gene id G299482
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 209994 ~ 217409 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU354869
GCAAAAGGCCGCGCGAGACTCACCTGAGACTCCAACCGGAAGCAGGAAACAGcgaagttaaaaataaaactccaaACGGTTTTCTGAGTAAATAAAGATCCAAATCTAAATAAAGACTTACACGCACTAACAACACGCACAAAACGCACACAACAAACTTAACACACACCGACACTCCCAGTCCGGTGTGTAAAACTTCCGACTCTGGCCCGAAACTCAGGTACAGCGATGACGTCACCGACCCACGCGTCACACCTTTACCGAGCACGCGCACGCACCACCACCCcctccacccacccacacacacacacacacacacacacacacacacacacacagagtggttTCAGGCACAGAATGCAAAagcaacattaaataaaatattttacaataatacatgtgctaaaataacagaaaacagcTGACGTGTGTGAggataacactcacacacacacacacacatacgtgtTCAGTCACAGCGGCTGATCGTGAGATGTGGATTCATGTACAATGTGGATGTCAGTGATGTATTTTAAACACGTACACATCAGCGTGTCAGAGTTCTGCAGGAACATTTCACAAACAGCCAAGAGGAAGAGCgtttaattcaaataaacaattttttaaaactccaAATAAATGCACTGAATCAGGAAAActgctttagaaaataaaatgtagatattaatttagaaaaacaaaaggaacaaaataaaggggaaaaatagGAACAAAGCacttttaatttagaaaataaattacGGAATATGTTTAACTCAGAACATATTTAGGTTTGGAAAAATAAACGGGCAAAATACAttctgaataagaaaaaaaacagaaactaaagttcataataaaaaaaaatagaaagtggGCCGAAAGaacgattttttaaaaaagtagttAATTTGAACGTTACCCTTTCACACGCTGCAGAAAATAAACGAGACTAAGAGCTTTTTATCTGCACTGAGGTTTGAGCAGGTGAGCTTTCAGTCCACACTGTCCTCTTCACACCAGACACACTCCGTCCGCTGACACGTGctcagtgtgtgaagtgtgttccTGTAGTCCTGCGCTGGAGCTACGAGGCTGAAGATCACCAGTAAAGAGAGCGTATAGCCTGTGTTTAGCACGGAGCAGTCTGGGTtcgagctgtgtgtgtgtgtgtgtgtgtgtgtgtgtacgtcatcACAGGGAACACTGTGTACATGTTCATGTTTCGGCTGGAGTcagaatttacacacacacacacacacacaaaaaaaaaaaagaaacgagaGATGATACCTGtttttacagaataaaatatataattatgatGGATTTACAAATAACTGAATACATCTGTAGCAGCAGTCATCGTTCATTTGGACTTAATTCAAATAgtttcacatttaaattaaatttgtgttaTGCGAGattaaaaagaacaataaacaaCCAACGCATGCAATACTGAGAACATGAGGAGACCGCGAGGCACGTGCCGATCATCAGCTTTATACCATATATCGCAATACTGTATTAAATATGTGTTAATGtcgtcactgtgtgtgtgtgtggaggacaGAACGGGCGTTTCACCCACGGTGATATCAGAACGGTGAACATTATCGCCCTCTGAATGCTAAAGATCGGcggttgccatggaaacaccAATAACGATGAAGACTATGACAAATCAAATTAACTTTTCTAACCTCTTccgttctttttttcttttaaaaattatgtttctAAACTCTTCTTACAGAGACGTAATGAGTTTTAGCACctgttattacacacacacacacacacacacacaaagcattagtttttacttttagtacagaataatttaaataaagcaaCTTTTTTTTCGTCGTGAGTTAAAGTGTCCATAATCACGTCTTTTATAAATCATGTGTGCAGGTTCATCCCTGGGCACGCTGACGGTTTTaaacactctcactctctcacacgcgcgcacacacacacacacacacacagagtcggCAGCAGTGCGCGAGTCTCACTGGGCTGCTACCGGTTTAATTTTGAAGATGAAGATATGAAGGTGTGAGGCGATCTggttacacacactcacacagtaaCGAACCAGATCAAACAGGGACAGca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU354869 True 2127 lncRNA 0.40 2 209994 217409

Neighbor

gene id symbol gene type direction distance location
LOC113525392 stk38,stk38b,LOC105900354,LOC107667630,LOC105016867,LOC108265501 coding downstream 8855 226264 ~ 241666 (+)
pparda ppard,ppardb,LOC108281076 coding downstream 65458 282867 ~ 295160 (+)
wdr77 wdr77 coding downstream 98559 315968 ~ 326307 (+)
zgc:153675 LOC108255011 coding downstream 159153 376562 ~ 380543 (+)
btg2 LOC108255010 coding downstream 188699 406108 ~ 409450 (+)
G299486 NA non-coding upstream 5082 203812 ~ 204912 (+)
G299503 NA non-coding upstream 31329 173753 ~ 178665 (+)
G299494 NA non-coding upstream 59357 140422 ~ 150637 (+)
G299492 NA non-coding upstream 62437 136884 ~ 147557 (+)
G299473 NA non-coding upstream 88651 120513 ~ 121343 (+)
G299522 NA non-coding downstream 18667 236076 ~ 236490 (+)
G299528 NA non-coding downstream 34314 251723 ~ 254232 (+)
G299618 NA non-coding downstream 347867 565276 ~ 565508 (+)
G299625 NA non-coding downstream 384149 601558 ~ 602113 (+)
G299679 NA non-coding downstream 590750 808159 ~ 809350 (+)
LOC113525237 LOC108281078 other upstream 20677 165615 ~ 189317 (+)
dram2b NA other downstream 134179 351588 ~ 360258 (+)
cdkn1a cdkn1a other downstream 298131 515540 ~ 520943 (+)
LOC117599902 NA other downstream 461508 678917 ~ 726922 (+)
mfap2 mfap2 other downstream 541100 758509 ~ 805098 (+)
LOC113539702 LOC108281106 other downstream 625444 842853 ~ 844870 (+)

Expression


Co-expression Network