G299486


Basic Information

Item Value
gene id G299486
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 203812 ~ 204912 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU354873
tctgacaaaaaaattacatgacaGTAGACATAAAGTAGACATGACAAAGACGTGATAAAATTGATGAGGATTAAGGGAATGACAGCAGAATTAGGACAGTCCCCAGACTACAGCAGTCTTATGGCCAATGTCCACTTTAAATAGTGCATAATGGTGAAAAGGAAAGAGTGTGTATTTAGCCAATCAGACAAGAAGGTCACTAATAAAATAGCTTTAATTTGCTATAAGCATAAGACAGTGAGACTACAGACACGCCCACCAACAGCAAAAGTAGATACATACATTTAGTGTCTAACTGacctcatttacataaaatatctgtttaataaacaaatatgccaaatctataaacacaaacacacaactctaTAACCAcaaacatgcaacaaatttataaacacaaacactcgaTGCTACAAAAAACTAAAAGCagtaatatttcaaataaactaaataaatgtatataaatgtacaaGAAAAActtggctgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagagactgagtcCAGAGTAAAAGCTTactcaggctgtgtgtgtgtttgtgtgtgtttttgggagtCACTGCGCATGCAAGGGGTGGGGCAGGTGGGTGGGGCCAGCAGATGGGAGGGGCCAGGCCTCGTTGCCCTGGTGATTCTGCAGCAGGCGGTACAGCTGTTTGAGCTGTGTGACAATGTTGTCCTTTATGTCCGGGACAGAAATCTGGAGACGCACACTGGAGCTGTCAAAGGAACGAGTTCCATCTGAACTGAACATCTCAGTGATGATCCTCGCCACCACAGGGactacctacacacacacacaggcatgcgcgcacacacacacacacaggcatgcgcgcacacacacacacacaggcacgcgcgcacacacacacaggcacgcgcgcacacacacacaggcatgcgcgcacacacacacaggcatgcacacacacaggcatgcacacacacaggcatgcacacacacaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU354873 True 1041 lncRNA 0.45 2 203812 204912

Neighbor

gene id symbol gene type direction distance location
LOC113525392 stk38,stk38b,LOC105900354,LOC107667630,LOC105016867,LOC108265501 coding downstream 21352 226264 ~ 241666 (+)
pparda ppard,ppardb,LOC108281076 coding downstream 77955 282867 ~ 295160 (+)
wdr77 wdr77 coding downstream 111056 315968 ~ 326307 (+)
zgc:153675 LOC108255011 coding downstream 171650 376562 ~ 380543 (+)
btg2 LOC108255010 coding downstream 201196 406108 ~ 409450 (+)
G299503 NA non-coding upstream 25147 173753 ~ 178665 (+)
G299494 NA non-coding upstream 53175 140422 ~ 150637 (+)
G299492 NA non-coding upstream 56255 136884 ~ 147557 (+)
G299473 NA non-coding upstream 82469 120513 ~ 121343 (+)
G299470 NA non-coding upstream 91871 111016 ~ 111941 (+)
G299482 NA non-coding downstream 5082 209994 ~ 217409 (+)
G299522 NA non-coding downstream 31164 236076 ~ 236490 (+)
G299528 NA non-coding downstream 46811 251723 ~ 254232 (+)
G299618 NA non-coding downstream 360364 565276 ~ 565508 (+)
G299625 NA non-coding downstream 396646 601558 ~ 602113 (+)
LOC113525237 LOC108281078 other upstream 14495 165615 ~ 189317 (+)
dram2b NA other downstream 146676 351588 ~ 360258 (+)
cdkn1a cdkn1a other downstream 310628 515540 ~ 520943 (+)
LOC117599902 NA other downstream 474005 678917 ~ 726922 (+)
mfap2 mfap2 other downstream 553597 758509 ~ 805098 (+)
LOC113539702 LOC108281106 other downstream 637941 842853 ~ 844870 (+)

Expression


Co-expression Network