cdkn1a (cdkn1a)


Basic Information

Item Value
gene id cdkn1a
gene name cdkn1a
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 515540 ~ 520943 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU355032
cacacacacacacacacacacacacacacaacacacacacacacacacactacacgcaGGACTGTGTGAAGGATTTCTGGAAAAAAcactcagatttttttcccacagcaacaaataattatttaattgtgttttattttattttattattattttattttattgtgttatttgtgttgttttcGGTAAAAATGTAAACGCTTCATCATTTATTGTGCAATTCCTGTTAACCTGGATATAAAGATTAACGCTCAGCACTGCTTCTGCTCCATGCAGTTCATTTCATCTCCTTTAATTTAAAAGGAAGACGAGACGATTACAAACTCTgatctggaacacacacacacacacacaaacacacacacggttcacacacacacacacacacacacacacacacacggttcacacacacacacacacacacacggttcacacacacacacacactacactaatcCTACAGATATTATGAGTGTCAGTGACGTGAAGTCATGTATAGGATTATATTAGTGTTCATGTTGTTGGAATATTAAATATCCGTCTGTGTATCAGAAGCtgtataaacactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcagatacagagtattgactttatttatttattacattatattgaattaaatgtgtaaataaaactaaaaataaaacagcatttctg
>XM_026935275.2
tgtgtgtgtgtgtggggtgccCCCTGCTGTCTGTTCcttctcagtgttgtgtagagaACATGTCTGTACTTGTTGTTAGGACCATTTTGCCCGGACATGTAACACAGTGAGTCACTCGCTTTTAAAACCCtgagcagcgtgtgtgtgtttctgtgtgtgtgtgtgtgtgtgtgtgtgggtatacatacacaccaacacCTTCAGTCTGATTCACACTGAGCTGATGtgtgtgatgatgtcactgcCGGTGCGTGGACGTGTGTTGCGGGCAGTGTGTAgcggtggtgttggtggtgttgagGGTGGTGTTGagggtggtgttggtggtgttggtggtggtgttggtggtgctgCTCGGCGGTGTTTGTTCGGTGCAGTGGATCATGAGGAGCTGCAGCGCGACTACATGCTGCTGATGAGGGCGGAGCTTGAAGGCGCTTCACGCCGCTGGAGCTTCGACTTCATCACCAACAAACCACGGATGGGCGGAGACTTCGAGTGGGTGGGGCTTCCTGAGGCTCGAGTTCCTTTTCTTTACCGTGATTGCACAGTAGGAGCAGAGCCTCGACCAAAGGGGGCGGGGCCAGCATCCGATCTCGAGAAGGAGGACATTCCTAAAACACCTGAGCGATgcgacagaaacacacacagtgcagagaaacacacactgaagagGAAGCAGACCAACATCACagACTTCTATCAGGCCAAGAGGCGAGTCGTCACCACCAGGAAGTCAGGCCAGTGacctgaggacacacacacacttcatacacacacacacacacacacacacacacacacactacacgcaGGACTGTGTGAAGGATTTCTGGAAAAAAcactcagatttttttcccacagcaacaaataattatttaattgtgttttattttattttattattattttattttattgtgttatttgtgttgttttcGGTAAAAATGTAAACGCTTCATCATTTATTGTGCAATTCCTGTTAACCTGGATATAAAGATTAACGCTCAGCACTG
>XM_026935276.2
TGTATTAGACATTGTGTATTAGACAGTGTATTAGACATTGTGTATTAGACAGTGTGTAttagacagtgtgtgttacacagtATGTATTAGACATTGTGTATTAGACAGTGTATTAGACAGTGTGTATTAGACAGTGTGTATAAGACATTGTGTATTACACAGTGTGTATAAGACATTGTGTATTACACAGTGTGTAttagacagtgtgtgttagtgtgtattagacTGTGTGTATTAGACAGTGTGTATTAGACAGCGTGTATTAGACAGAGTGTAttagacagtgtgtgttaatgtgtattaGACAGCGTGTATTAGACTGTGTGTATTAGACTGTGTTTATTAGACAGTGTGTAATAGACTGTGTGTATTAGACTGTGTGTATTAGACTGTGTGTATTAGACAGCGTGTATTAGACagcgtgtgttagtgtgtattagacAGCGTGTATTAGACAGCGTGTATTAGACTGTGTGTATTAGACAGTGTGTATTAGACTGTGTGTATTAGACAGTGTGTATTAGACTGTGTGTATTAGACAGTGTGTATTAGACAGCGTGTATTAGACAGTGTGTAttagacagtgtgtgttagtgtgtattagacAGCGTGTATTAGACAGCGTGTATTAGACTGTGTGTATTAGACAGTGTGTATTAGACAGCGTGTATTAGACAGCGTGTATTAGACAGTGTGTAttagacagtgtgtgttagtgtgtattagacAGTGTGTATTAGACAGCGTGTATTAGACAGTGTGTATTAGACAGCGTGTATTAGACTGTGTGTATTAGACTGTGTGTATTAGACAGTGTGTATTAGACAGTGTGTATTAGACAGTGTGTATTAGACAGCGTGTATTAGACAGTGTGTGCTGGTACACAGACGCGacacagaaaactttactgaACTTTAAACCGGACTGACAGTTTATTTAGACGTGTCTTCAGAAACAAACTGCACATTTCTCAacataataaaatcattacTCAGtgtgtgatgatgtcactgcCGGTGCGTGGACGTGTGTTGCGGGCAGTGTGTAgcggtggtgttggtggtgttgagGGTGGTGTTGagggtggtgttggtggtgttggtggtggtgttggtggtgctgCTCGGCGGTGTTTGTTCGGTGCAGTGGATCATGAGGAGCTGCAGCGCGACTACATGCTGCTGATGAGGGCGGAGCTTGAAGGCGCTTCACGCCGCTGGAGCTTCGACTTCATCACCAACAAACCACGGATGGGCGGAGACTTCGAGTGGGTGGGGCTTCCTGAGGCTCGAGTTCCTTTTCTTTACCGTGATTGCACAGTAGGAGCAGAGCCTCGACCAAAGGGGGCGGGGCCAGCATCCGATCTCGAGAAGGAGGACATTCCTAAAACACCTGAGCGATgcgacagaaacacacacagtgcagagaaacacacactgaagagGAAGCAGACCAACATCACagACTTCTATCAGGCCAAGAGGCGAGTCGTCACCACCAGGAAGTCAGGCCAGTGacctgaggacacacacacacttcatacacacacacacacacacacacacacacacacactacacgcaGGACTGTGTGAAGGATTTCTGGAAAAAAcactcagatttttttcccacagcaacaaataattatttaattgtgttttattttattttattattattttattttattgtgttatttgtgttgttttcGGTAAAAATGTAAACGCTTCATCATTTATTGTGCAATTCCTGTTAACCTGGATATAAAGATTAACGCTCAGCACTG
>XR_004580271.1
tgtgtgtgtgtgtggggtgccCCCTGCTGTCTGTTCcttctcagtgttgtgtagagaACATGTCTGTACTTGTTGTTAGGACCATTTTGCCCGGACATGTAACACAGTGAGTCACTCGCTTTTAAAACCCtgagcagcgtgtgtgtgtttctgtgtgtgtgtgtgtgtgtgtgtgtgggtatacatacacaccaacacCTTCAGTCTGATTCACACTGAGCTGATGtgtgtgatgatgtcactgcCGGTGCGTGGACGTGTGTTGCGGGCAGTGTGTAgcggtggtgttggtggtgttgagGGTGGTGTTGagggtggtgttggtggtgttggtggtggtgttggtggtgctgCTCGGCGGTGTTTGTTCGGTGCAGTGGATCATGAGGAGCTGCAGCGCGACTACATGCTGCTGATGAGGGCGGAGCTTGAAGGCGCTTCACGCCGCTGGAGCTTCGACTTCATCACCAACAAACCACGGATGGGCGGAGACTTCGAGTGGGTGGGGCTTCCTGAGGCTCGAGTTCCTTTTCTTTACCGTGATTGCACAGTAGGAGCAGAGCCTCGACCAAAGGGGGCGGGGCCAGCATCCGATCTCGAGAAGGAGGACATTCCTAAAACACCTGAGCGATgcgacagaaacacacacagtgcagagaaacacacactgaagagGAAGCAGACCAACATCACagACTTCTATCAGGCCAAGAGGCGAGTCGTCACCACCAGGAAGTCAGGCCAGTGacctgaggacacacacacacttcatacacacacacacacacacacacacacacttcacacacacacacacactacactaatcCTACAGATATTATGAGTGTCAGTGACGTGAAGTCATGTATAGGATTATATTAGTGTTCATGTTGTTGGAATATTAAATATCCGTCTGTGTATCAGAAGCtgtataaacactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcagatacagagtattgactttatttattta

Function

symbol description
cdkn1a Predicted to enable cyclin-dependent protein serine/threonine kinase inhibitor activity and kinase activity. Acts upstream of or within aorta development; response to X-ray; and skeletal muscle cell differentiation. Predicted to be located in nucleus. Is expressed in several structures, including digestive system; hatching gland; male organism; nervous system; and pectoral fin bud. Human ortholog(s) of this gene implicated in high grade glioma; ocular hypertension; oral mucosa leukoplakia; oral squamous cell carcinoma; and primary open angle glaucoma. Orthologous to human CDKN1A (cyclin dependent kinase inhibitor 1A).

NR:

description
cyclin-dependent kinase inhibitor 1-like isoform X3

GO:

id name namespace
GO:0010165 response to X-ray biological_process
GO:0035914 skeletal muscle cell differentiation biological_process

KEGG:

id description
K06625 CDKN1A, P21, CIP1; cyclin-dependent kinase inhibitor 1A

RNA

RNA id representative length rna type GC content exon number start site end site
TU355032 False 690 lncRNA 0.36 2 518417 520943
XM_026935275.2 False 1016 mRNA 0.49 3 518567 520513
XM_026935276.2 True 1785 mRNA 0.42 3 515540 520513
XR_004580271.1 False 1003 misc_RNA 0.50 4 518567 520887

Neighbor

gene id symbol gene type direction distance location
srsf3b srsf3,srsf3b,LOC107569752,LOC107690536,LOC107656901 coding upstream 7187 503469 ~ 508353 (+)
apobec2a LOC108281085 coding upstream 19903 492045 ~ 495637 (+)
arl8a arl8a,LOC107671521,LOC107722853,LOC107569762,LOC107750681 coding upstream 76363 431512 ~ 439177 (+)
btg2 LOC108255010 coding upstream 106090 406108 ~ 409450 (+)
zgc:153675 LOC108255011 coding upstream 134997 376562 ~ 380543 (+)
tmcc2 tmcc2,LOC107569750,LOC107690538,LOC107656904,LOC107572364 coding downstream 1433 522376 ~ 530478 (+)
bysl bysl coding downstream 21094 542037 ~ 547617 (+)
ccnd3 ccnd3 coding downstream 27890 548833 ~ 554712 (+)
dstyk dstyk coding downstream 50645 571588 ~ 607621 (+)
nbl1 nbl1,LOC105897883 coding downstream 167008 687951 ~ 696115 (+)
G299528 NA non-coding upstream 261308 251723 ~ 254232 (+)
G299522 NA non-coding upstream 279050 236076 ~ 236490 (+)
G299482 NA non-coding upstream 298131 209994 ~ 217409 (+)
G299486 NA non-coding upstream 310628 203812 ~ 204912 (+)
G299503 NA non-coding upstream 336875 173753 ~ 178665 (+)
G299618 NA non-coding downstream 44333 565276 ~ 565508 (+)
G299625 NA non-coding downstream 80615 601558 ~ 602113 (+)
G299679 NA non-coding downstream 287216 808159 ~ 809350 (+)
G299708 NA non-coding downstream 317420 838363 ~ 838915 (+)
G299695 NA non-coding downstream 324525 845468 ~ 847722 (+)
dram2b NA other upstream 155282 351588 ~ 360258 (+)
LOC113525237 LOC108281078 other upstream 326223 165615 ~ 189317 (+)
LOC117599902 NA other downstream 157974 678917 ~ 726922 (+)
mfap2 mfap2 other downstream 237566 758509 ~ 805098 (+)
LOC113539702 LOC108281106 other downstream 321910 842853 ~ 844870 (+)
fbxo42 fbxo42,LOC107719051,LOC107656898 other downstream 342315 863258 ~ 872756 (+)
erc2 erc2,LOC107582387,LOC108414413,LOC107694874,LOC107699320 other downstream 927499 1448442 ~ 1494645 (+)

Expression


Co-expression Network