G299625


Basic Information

Item Value
gene id G299625
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 601558 ~ 602113 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU355059
acacacacacacacgtatacacacgtataaacacacacacgtatacacacacacacacatatacatacacacacacacgtatacacacacatatacatatacatacacacacacacgtatacacacacatatacatacacacacgtatacacacacatatacatacacacacacacgtatacacacacacatatacatacacacacgtatacacacacatatacatatacacacacacacacacgtatacacacacatatacatacacacacacgtatacacacacatatacatatacacacacacacacgtatacacacacacatgtatacatacacacacagaggttatGGTCTGGTCTTTTTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU355059 True 366 lncRNA 0.38 2 601558 602113

Neighbor

gene id symbol gene type direction distance location
ccnd3 ccnd3 coding upstream 46846 548833 ~ 554712 (+)
bysl bysl coding upstream 53941 542037 ~ 547617 (+)
tmcc2 tmcc2,LOC107569750,LOC107690538,LOC107656904,LOC107572364 coding upstream 71080 522376 ~ 530478 (+)
srsf3b srsf3,srsf3b,LOC107569752,LOC107690536,LOC107656901 coding upstream 93205 503469 ~ 508353 (+)
apobec2a LOC108281085 coding upstream 105921 492045 ~ 495637 (+)
nbl1 nbl1,LOC105897883 coding downstream 85838 687951 ~ 696115 (+)
LOC113539512 LOC108281094 coding downstream 96913 699026 ~ 703360 (+)
LOC113539444 vwa1 coding downstream 123427 725540 ~ 740352 (+)
fndc10 fndc10 coding downstream 146536 748649 ~ 752616 (+)
ssu72 ssu72,LOC107690546 coding downstream 151241 753354 ~ 761217 (+)
G299618 NA non-coding upstream 36050 565276 ~ 565508 (+)
G299528 NA non-coding upstream 347326 251723 ~ 254232 (+)
G299522 NA non-coding upstream 365068 236076 ~ 236490 (+)
G299482 NA non-coding upstream 384149 209994 ~ 217409 (+)
G299486 NA non-coding upstream 396646 203812 ~ 204912 (+)
G299679 NA non-coding downstream 206046 808159 ~ 809350 (+)
G299708 NA non-coding downstream 236250 838363 ~ 838915 (+)
G299695 NA non-coding downstream 243355 845468 ~ 847722 (+)
G299719 NA non-coding downstream 271122 873235 ~ 873473 (+)
G299659 nckipsd non-coding downstream 339723 941836 ~ 943526 (+)
cdkn1a cdkn1a other upstream 80615 515540 ~ 520943 (+)
dram2b NA other upstream 241300 351588 ~ 360258 (+)
LOC113525237 LOC108281078 other upstream 412241 165615 ~ 189317 (+)
LOC117599902 NA other downstream 76804 678917 ~ 726922 (+)
mfap2 mfap2 other downstream 156396 758509 ~ 805098 (+)
LOC113539702 LOC108281106 other downstream 240740 842853 ~ 844870 (+)
fbxo42 fbxo42,LOC107719051,LOC107656898 other downstream 261145 863258 ~ 872756 (+)
erc2 erc2,LOC107582387,LOC108414413,LOC107694874,LOC107699320 other downstream 846329 1448442 ~ 1494645 (+)

Expression


Co-expression Network