G299659 (nckipsd)


Basic Information

Item Value
gene id G299659
gene name nckipsd
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 941836 ~ 943526 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU355109
TGGCATCTTTATTAGTGTTGTAAACTTTAcgaaaatacattttgttacCATTTCCCTTCTGAACACAATCCCCTCTGAGAGAACACGTAAGCTTTAACACATCATTAAAGCAACATGAAACAGTTTCCCACTCAATTCAGCTCTTTAAAtctctgcctcacacacacacacacacacacacacacacacagcTTGTTCACTCCATCACACCTTACTTTCTGAGTTCAATCTTTCTCTGCACTGGTGTACtctatgtttatgtgtgtatgagttaaAGAGTGTGAATTATAATACTGACAGAAAGTAATCTTACTAGGGACACTTGATCTAGTGTATAATACTGGACAGACAGGGAAAGAGATTCTCCTCCATACATTACAATGATGGAATTGACAAAGTAAAACacccagaaaaaaagaagagagaggtAGAGACTGAGACGATGTGAGATGATATGTatctgaacaaaaaaacaaacaataacaaaaacattgattgaaaaacactgacatttagAATATTGCAGAATGCAGCtccaaacagaacagaacagctCAGTTTAGGACACAGCACAGGAGGTTTAGTAAGGCTCAGGAGATTAAAGCTGAGATTCGGATGAAATGTGATGAAGTGTGCACTAATAAGCAAAAACACTGCAGGATGTTAGATCAGATTTACTCCATAATGCTGATGCAGAAGTCTGAGCAATCCATGAGTTAGCTACAATCTGACCTCTAGCACTCATTACCGTATTTCCCAGACTATAAGGTGCGTACAGATGTTATAATCTCTGCACAAGCATGAACAGCATCTCACTTAACATAAATAAGTGTGATTTATTGTAATCTAATGATTTGATTTGAACTTGAGCAGTTGTAGCATTATGGGGGCCTCCATCCTTATTCCCCCTTAGTGCAGTTTGTTGTCACTTGGCATCAAGGCTCCGCCTCCAAGAGTCTAAAGGTGCAGGTGTAGCTGGTACTTTAACTGATGCAGGCGATGATAaaattccacttttttccccaaagttaAATGTGTGAATACAGACTGCTGATGTTCGTCGCTGCTATTTTACACAATCATTTAATCAAAATAGAACTTACTGACCTTAATGATGTCACTTGATGTATATGTAGGTATATGAAAATTTGGACCTGTATTTAGGGATTATGGATTTACTGCGTCGGTTATATACAATAAACTCGTCTCGGCTGATCGACATTTGGGTTAAAGATGGTTCTATAATAAAGCATTTCAGAGAATTTCAGAGAATTtatgaattttgaatttatgaattttgaTTATCTGGAAAATATGGTAGTGCTCTTGTTTTATGTTGAGAAATTCCGCTTACATGTCGTACTCGGTGAAGTATGCTTCTACACCTGCCCCCTGTGTGTAAGGGACTTCGGTGTAGTGCACACGGTCAGCGTTAGGGACGGAGCTGTCAGTCGGCGCCGATCTGAGGGAACTCTTTATAAATCTGCTGCACTATGAGCTTGTCCATCTGTCTGGCCTGAGCCGAGCTCTCGTCCTCTCCGGGGTCGTCCTCCTCTCCCAGAATCCTCTGCAGCGCCGCCTGCAGGTCAGAGAGACGGTGCTGATGCTGCAGGTAATCGGTGGTGCGCACGATGGCGTGCATGAGCGAGAGATACTCCATCct

Function

symbol description
nckipsd Predicted to enable Arp2/3 complex binding activity and myosin binding activity. Predicted to be involved in endocytosis. Orthologous to human NCKIPSD (NCK interacting protein with SH3 domain).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU355109 True 1663 lncRNA 0.41 2 941836 943526

Neighbor

gene id symbol gene type direction distance location
si:ch1073-335m2.2 LOC108254705,LOC107737932 coding upstream 15277 906429 ~ 926559 (+)
fblim1 fblim1,LOC107719030,LOC100709954 coding upstream 39255 888372 ~ 902581 (+)
LOC113539452 NA coding upstream 53486 884715 ~ 888350 (+)
slc25a34 slc25a34,LOC102777532 coding upstream 58290 875393 ~ 883546 (+)
sdhb sdhb,LOC107656920,LOC105905141,LOC104949017,LOC100705239 coding upstream 148783 786355 ~ 793053 (+)
ndufaf3 ndufaf3 coding downstream 8017 951543 ~ 967971 (+)
LOC113539739 tmem43 coding downstream 19501 963027 ~ 969188 (+)
LOC113539454 LOC108254709 coding downstream 41804 985330 ~ 986510 (+)
LOC113539455 LOC108444095 coding downstream 65323 1008849 ~ 1083835 (+)
LOC113539532 wu:fd14a01,LOC108444093,LOC108444092,LOC108254796,LOC108443910,LOC108443907 coding downstream 145327 1088853 ~ 1098976 (+)
G299719 NA non-coding upstream 68363 873235 ~ 873473 (+)
G299695 NA non-coding upstream 94114 845468 ~ 847722 (+)
G299708 NA non-coding upstream 102921 838363 ~ 838915 (+)
G299679 NA non-coding upstream 132486 808159 ~ 809350 (+)
G299625 NA non-coding upstream 339723 601558 ~ 602113 (+)
G299734 NA non-coding downstream 10909 954435 ~ 990707 (+)
G299735 NA non-coding downstream 22004 965530 ~ 1006953 (+)
G299773 hyal2 non-coding downstream 311540 1255066 ~ 1298909 (+)
G299787 NA non-coding downstream 328621 1272147 ~ 1272673 (+)
G299786 NA non-coding downstream 335322 1278848 ~ 1301404 (+)
fbxo42 fbxo42,LOC107719051,LOC107656898 other upstream 69080 863258 ~ 872756 (+)
LOC113539702 LOC108281106 other upstream 96966 842853 ~ 844870 (+)
mfap2 mfap2 other upstream 136738 758509 ~ 805098 (+)
LOC117599902 NA other upstream 214914 678917 ~ 726922 (+)
cdkn1a cdkn1a other upstream 420893 515540 ~ 520943 (+)
erc2 erc2,LOC107582387,LOC108414413,LOC107694874,LOC107699320 other downstream 504916 1448442 ~ 1494645 (+)
LOC117599925 NA other downstream 553334 1496860 ~ 1499172 (+)
mon1a mon1a other downstream 1109557 2053083 ~ 2060641 (+)
camkvb camkv,LOC108414427,LOC107718199,LOC107685970,LOC107715795,LOC107659532,LOC107576418 other downstream 1197996 2141522 ~ 2188917 (+)
LOC113539549 LOC108254930 other downstream 1772136 2715662 ~ 2723581 (+)

Expression


Co-expression Network