G299679


Basic Information

Item Value
gene id G299679
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 808159 ~ 809350 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU355137
TTGCTGTTTGAAATTATTTCAGGTTTATTGTTTTCTGGggtgaaatgattaaaatttatCCATTAATCGAGTTACATCATTAGAAAAAGtccagacatacacatacagaccAGAGTTAATAATACATAGTACATGGagtgtacagaaaaaaaatcatatctcactctctaaaaataaaaaaataaagaagttaaAATATCTGTCAGACATTTTTATGTCAAATTCAGCAGAttctacatttaataataataatcctaatCCAGATTTTGGTCCAGATTTGAGTCAGCGTTGTGTGCTGTCAAGTCCACAATTCTGTTTATCACATGATAGTCAACATGAAAGTTCGagaaattgtgtaaaaaaaaaaatagatatcgTAATAACCTCAGAAGTTCGTCAGTGATAAAATACTGTGCGATGTGAAAAACGGAACATCGACACACGTGTAGCGCCTCGCTGCGAACGGCGAAGGTCCTGGCTTCATTTTCACCTGAGTGCGGAGACACACACTTCATAGTGTTCACTCTACAGGACACACacgctaatgttgctaacagtGACTGAAGGTGGCATCAATTAGCACAAACGACACCTGAAGGTAAAGACAATCCCGACGTCTTCACTGCACAGTCGCAGCGACGGAATTACGGTCATGTGACCATGGCAAAATGAATGACATCAAAGGTGTGACATCACAGAATTACACACCATTCAGTAGAACCGATATAGAAACTCAGACAgtgtaacacacacacacacacacacacacacacctgagcggGAAGCTGCCTGTGTACCTGCTGATCTCAGGTCAGTGCTGTGTGAGTCTCTGCAGGCGTTAGTGGTTAAAGCTGTTCTCAGATCAGGTGGGATTTCCAAGTggaacacgaacacacacacacacacacacacacagatctgtaGCAGGTCACATGACGTGTTTGTCACATGATGTGCGCTGGTCTCCACGGTGACTATAACATCAGTGTGTATTGGTACGGGCTGACCTCAGATCAGTTACTCAGGGGCAGAGACGGATGTCGGCGCCGTAATTCGTGCTGGAGCTGCTCCTTCAGAGTGGACAcctttaataacacacacacgcacacacacacgcacacacacacacacgcgcacacacacacacacacacacacacacacacacaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU355137 True 1170 lncRNA 0.43 2 808159 809350

Neighbor

gene id symbol gene type direction distance location
sdhb sdhb,LOC107656920,LOC105905141,LOC104949017,LOC100705239 coding upstream 15106 786355 ~ 793053 (+)
tmem240b tmem240 coding upstream 38204 762266 ~ 769955 (+)
ssu72 ssu72,LOC107690546 coding upstream 46942 753354 ~ 761217 (+)
fndc10 fndc10 coding upstream 55543 748649 ~ 752616 (+)
LOC113539444 vwa1 coding upstream 67807 725540 ~ 740352 (+)
slc25a34 slc25a34,LOC102777532 coding downstream 66043 875393 ~ 883546 (+)
LOC113539452 NA coding downstream 75365 884715 ~ 888350 (+)
fblim1 fblim1,LOC107719030,LOC100709954 coding downstream 79022 888372 ~ 902581 (+)
si:ch1073-335m2.2 LOC108254705,LOC107737932 coding downstream 97079 906429 ~ 926559 (+)
ndufaf3 ndufaf3 coding downstream 142193 951543 ~ 967971 (+)
G299625 NA non-coding upstream 206046 601558 ~ 602113 (+)
G299618 NA non-coding upstream 242651 565276 ~ 565508 (+)
G299528 NA non-coding upstream 553927 251723 ~ 254232 (+)
G299522 NA non-coding upstream 571669 236076 ~ 236490 (+)
G299482 NA non-coding upstream 590750 209994 ~ 217409 (+)
G299708 NA non-coding downstream 29013 838363 ~ 838915 (+)
G299695 NA non-coding downstream 36118 845468 ~ 847722 (+)
G299719 NA non-coding downstream 63885 873235 ~ 873473 (+)
G299659 nckipsd non-coding downstream 132486 941836 ~ 943526 (+)
G299734 NA non-coding downstream 145085 954435 ~ 990707 (+)
mfap2 mfap2 other upstream 3061 758509 ~ 805098 (+)
LOC117599902 NA other upstream 81237 678917 ~ 726922 (+)
cdkn1a cdkn1a other upstream 287216 515540 ~ 520943 (+)
dram2b NA other upstream 447901 351588 ~ 360258 (+)
LOC113525237 LOC108281078 other upstream 618842 165615 ~ 189317 (+)
LOC113539702 LOC108281106 other downstream 33503 842853 ~ 844870 (+)
fbxo42 fbxo42,LOC107719051,LOC107656898 other downstream 53908 863258 ~ 872756 (+)
erc2 erc2,LOC107582387,LOC108414413,LOC107694874,LOC107699320 other downstream 639092 1448442 ~ 1494645 (+)
LOC117599925 NA other downstream 687510 1496860 ~ 1499172 (+)
mon1a mon1a other downstream 1243733 2053083 ~ 2060641 (+)

Expression


Co-expression Network