fbxo42 (fbxo42,LOC107719051,LOC107656898)


Basic Information

Item Value
gene id fbxo42
gene name fbxo42,LOC107719051,LOC107656898
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 863258 ~ 872756 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU355179
TGCAGGGAGGAAGATGGCGGATGTTTGGAGTCtggagagcagcagcagcagcagcaggagctgaTAAAAGAGAATCGTCAAACGGCAGCGAATCTGAGGACACAACAGGACGGGAAAGGGaggacacactcacacacacacgccgGCAGCATGTCTCGCTCCTCCGACAGCGAGGACGGCTGCTTCGTTGCCATGGATACAGAGGACGCCGGAGCCACTTCAGCTGGGGGCCACGCCGGCGACCAGACCGCGGCGGCGGAGACGGAGACGACAGGCAACGCAAACTGCGCAAAGCATCCTGGGAAAAGCTGCCAGAGAGCCATGGGCGAGCTGCCGGAGGAAGTGCTGGAGTACATCCTGTCTTTCCTCTCCCCCTATCAGGAGCACAAGACCGCCGCCCTGGTGTGCAAACAG
>XM_034314473.1
GGTCCAGAACGCGCGTCGACGCCGAGAGCGCCAGGGAGGGCGTTACGTGCGCGCTCCCGCGTCCGTGCGTAAGCCGCTGCTGCAGGGAGGAAGATGGCGGATGTTTGGAGTCtggagagcagcagcagcagcagcaggagctgaTAAAAGAGAATCGTCAAACGGCAGCGAATCTGAGGACACAACAGGACGGGAAAGGGaggacacactcacacacacacgccgGCAGCATGTCTCGCTCCTCCGACAGCGAGGACGGCTGCTTCGTTGCCATGGATACAGAGGACGCCGGAGCCACTTCAGCTGGGGGCCACGCCGGCGACCAGACCGCGGCGGCGGAGACGGAGACGACAGGCAACGCAAACTGCGCAAAGCATCCTGGGAAAAGCTGCCAGAGAGCCATGGGCGAGCTGCCGGAGGAAGTGCTGGAGTACATCCTGTCTTTCCTCTCCCCCTATCAGGAGCACAAGACCGCCGCCCTGGTGTGCAAACAGTGGTACCGCCTCATcaaaggtgagagagagagagagagggagagagagagagggaaagagagaGtgttaatctgtgtgtgtgtgtgtgtgtgtgtgtttaaaggtgcGTGTTACTACGACTCGAATCAGTCGATGTACGTGTTTGGCGGCtgcacacagagcagctgtaaTGCAGCGTTTAATGACCTGTGGAGACTCGACCTGAACAGCAAGGAGTGGATACGACCGCTCGcttcagGCTCGTACCCGTCTCCTAAAGCCGGCGCGACGCTGGTGATGTTTAAGGACTTACTGGTGCTGTTCGGAGGTTGGACCCGGCCCAGTCCGTACCCTCTGCACCAACCCGAGCGCTTCTTCGACGAGATACACACCTACTCTCCCTCCAAAAACTGgtggaaCTGTATTGTGACGACTCACGGACCTCCACCCATGGCTGGTCACTCCTCCTCTGTCATTAAGAACACGATGGTGGTGTTCGGTGGCTCTCTCGGAGCTCGACAGATgaGTAATGAGGTGTGGGTTCTGGATCTTGAGCAGTGGTCCTGGTCCAAACCCACCATCACGGGCCCGGCTCCTCACCCGCGCGGAGGCCAGAGTCAGATCGTGATAGACGGCGAGACGCTGCTCATCCTCGGGGGCTGCGGCGGCCCGAACGCTctaCTGAAGGACGCCTGGTTGTTGCACATGGGCGCCCCCACCTGGTCATGGCAGCAACTGCGAGTAGAGAACGAGGAACATGGAGCTCCTGAGCTCTGGTGCCATCCGGCctgcaaggtggGCGAGTGTGTGGTCGTTTTCTCGCAGGCTCCATCTGGCCGCGCCCCTTTGAGCCCGAGCCTGAACTCCCGCCCTTCCCCCATCAGCGCCACGCCCCCTCCACTCGGCCCAGACACACCCCCGCTACGATCACAGTCTCCTGTGCGCTCTGGCGTCGTCCTTGGCAACGTGGAAGAAGCTCCTTGCGTCAACGGGCGCTGGGGAACGCTCCGGCCACGCCCAGCGACTGTTAGGGGCGGAGCCAGAGACGGAAGTCCCTCCTCTTCTCAGCAGCCATCTCCATCGCAGGCTCCAGACAGCCCGCCTTTGCTTAACGGTTCTTCCCCTTCCCCTCGTACTAGTCCCTCCCACCCACACGGTCAAGCCCATTTACCTACAGATTATGGATGGGAGTCTCCGCCCACTTCGGCATCATCATCACTGCCTCCGCCCTCTTTGGATCAGCCGAGCACAAATGGCATTCACACTCCGCCAGGTGCCGTTTCTCCTGCTGCGCTCCGCAGAAGCCTGGAAGCTGTTAAATCCCTCACAGCGTCCTCTCAttcttcatcctcatcttcctctAACCCCGCCCCGAGCTCCAGCCCCGCCTCGTCAAGCCCGCCGCAGGTTGACGGACACTCGATCCCTCCGATTGCGCGTCGCCTGGGCCACTCCGTGCCCCCGCAGAGCCTGAACGTGGGGAAGCCGCTGTACCAGGCGCTCAGCTGCAAGCCCATGCAGATGTACGTGCTGGACGTTTCACGGGCCAAGACAGACGGCGTCGTGGCATGGCGCGTCTTTGGCAGCGGCGCCGTCACCGGACCTCCGGAGACGAGCCTGCATACGGTGGTGCAGGGCAGAGGGGAGCTCATCATTTTCGGCGGGCTCATGGACAAAAAACAGAACGTCAAGTACTACCCAAAAACCAATGCCTTGTATTTCGTACGTGCTAAAAGGTAATGAGAGAGCGCAAGAAGGACACTGTTTGCAATTCGGGATGTGGGAATTTCCCCGCATTCTGACCTGGACACTGACATCATAAGACCTGCCTTTTAGGGAGAGACTGGAACGACTCGTGTGTCACATTCTCAACACTAATTCCTCGTCTCTCCTGAGATATCAATTTTGACACATATAAAGGACCTTTAATGAAGAACTGTTGTTGTATGACTGCTTTTCCTGACCTTCACTtcctctgcgtgtgtgtgtgtgtgcgggagATTAAAAACTGAAGGGACTGTTCCTCCCTTTCCTGCGATAGCGTCTCGTTGCAGATGAAGGGGGCTGGGAAACGGAGGAACGCTGCTGACTACCTTGCTTTTATATCTCACTTCCTGCCtgcattgtttacattttaagaTATGAACGAGATGGAGACAACGTGTGTCACTGCATGTGtctgtgaatgaatgtgtatgtgtataggaccttgtgtgtgtgtgtgtgtgtgtgtgtgtttggtgatcGATGTTTGGGTAGAGACGGGGAGGGAAAGGGAGGGTCATGTTGCAGTGTAACCTGATACAAAGTCAAACAATAAAGGCCTCCAAGTCTTTA

Function

symbol description
fbxo42 Orthologous to human FBXO42 (F-box protein 42).

NR:

description
F-box only protein 42-like

GO: NA

KEGG:

id description
K10317 FBXO42; F-box protein 42

RNA

RNA id representative length rna type GC content exon number start site end site
TU355179 False 414 TUCP 0.61 2 863338 864888
XM_034314473.1 True 2810 mRNA 0.57 9 863258 872756

Neighbor

gene id symbol gene type direction distance location
sdhb sdhb,LOC107656920,LOC105905141,LOC104949017,LOC100705239 coding upstream 70205 786355 ~ 793053 (+)
tmem240b tmem240 coding upstream 93303 762266 ~ 769955 (+)
ssu72 ssu72,LOC107690546 coding upstream 102041 753354 ~ 761217 (+)
fndc10 fndc10 coding upstream 110642 748649 ~ 752616 (+)
LOC113539444 vwa1 coding upstream 122906 725540 ~ 740352 (+)
slc25a34 slc25a34,LOC102777532 coding downstream 2637 875393 ~ 883546 (+)
LOC113539452 NA coding downstream 11959 884715 ~ 888350 (+)
fblim1 fblim1,LOC107719030,LOC100709954 coding downstream 15616 888372 ~ 902581 (+)
si:ch1073-335m2.2 LOC108254705,LOC107737932 coding downstream 33673 906429 ~ 926559 (+)
ndufaf3 ndufaf3 coding downstream 78787 951543 ~ 967971 (+)
G299695 NA non-coding upstream 15536 845468 ~ 847722 (+)
G299708 NA non-coding upstream 24343 838363 ~ 838915 (+)
G299679 NA non-coding upstream 53908 808159 ~ 809350 (+)
G299625 NA non-coding upstream 261145 601558 ~ 602113 (+)
G299618 NA non-coding upstream 297750 565276 ~ 565508 (+)
G299719 NA non-coding downstream 479 873235 ~ 873473 (+)
G299659 nckipsd non-coding downstream 69080 941836 ~ 943526 (+)
G299734 NA non-coding downstream 81679 954435 ~ 990707 (+)
G299735 NA non-coding downstream 92774 965530 ~ 1006953 (+)
G299773 hyal2 non-coding downstream 382310 1255066 ~ 1298909 (+)
LOC113539702 LOC108281106 other upstream 18388 842853 ~ 844870 (+)
mfap2 mfap2 other upstream 58160 758509 ~ 805098 (+)
LOC117599902 NA other upstream 136336 678917 ~ 726922 (+)
cdkn1a cdkn1a other upstream 342315 515540 ~ 520943 (+)
dram2b NA other upstream 503000 351588 ~ 360258 (+)
erc2 erc2,LOC107582387,LOC108414413,LOC107694874,LOC107699320 other downstream 575686 1448442 ~ 1494645 (+)
LOC117599925 NA other downstream 624104 1496860 ~ 1499172 (+)
mon1a mon1a other downstream 1180327 2053083 ~ 2060641 (+)
camkvb camkv,LOC108414427,LOC107718199,LOC107685970,LOC107715795,LOC107659532,LOC107576418 other downstream 1268766 2141522 ~ 2188917 (+)
LOC113539549 LOC108254930 other downstream 1842906 2715662 ~ 2723581 (+)

Expression


Co-expression Network