G299719


Basic Information

Item Value
gene id G299719
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 873235 ~ 873473 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU355181
aatGCATGTAACCGTGAAGGGGACAGCCAAAGagaacacactaaaacacacactcaaaccaCAACAGACATGAGACGTTTCTGCCTTAATGTTCTACTACTCTTGGTCTGGAAGGTTGTGAGGGAatctacaaagaaaaacaaagctggAAATTCCTCCAGACGTGGAGCTGGATACAAGACCAGGCCTCGTTAGTGTTTGTTAATCCAGCTGAACGTGTACAGTGATACGGTGTAAGC

Function

GO:

id name namespace
GO:0008289 lipid binding molecular_function

KEGG:

id description
ko04975 Fat digestion and absorption
ko04979 Cholesterol metabolism
ko04977 Vitamin digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
TU355181 True 239 lncRNA 0.45 1 873235 873473

Neighbor

gene id symbol gene type direction distance location
sdhb sdhb,LOC107656920,LOC105905141,LOC104949017,LOC100705239 coding upstream 80182 786355 ~ 793053 (+)
tmem240b tmem240 coding upstream 103280 762266 ~ 769955 (+)
ssu72 ssu72,LOC107690546 coding upstream 112018 753354 ~ 761217 (+)
fndc10 fndc10 coding upstream 120619 748649 ~ 752616 (+)
LOC113539444 vwa1 coding upstream 132883 725540 ~ 740352 (+)
slc25a34 slc25a34,LOC102777532 coding downstream 1920 875393 ~ 883546 (+)
LOC113539452 NA coding downstream 11242 884715 ~ 888350 (+)
fblim1 fblim1,LOC107719030,LOC100709954 coding downstream 14899 888372 ~ 902581 (+)
si:ch1073-335m2.2 LOC108254705,LOC107737932 coding downstream 32956 906429 ~ 926559 (+)
ndufaf3 ndufaf3 coding downstream 78070 951543 ~ 967971 (+)
G299695 NA non-coding upstream 25513 845468 ~ 847722 (+)
G299708 NA non-coding upstream 34320 838363 ~ 838915 (+)
G299679 NA non-coding upstream 63885 808159 ~ 809350 (+)
G299625 NA non-coding upstream 271122 601558 ~ 602113 (+)
G299618 NA non-coding upstream 307727 565276 ~ 565508 (+)
G299659 nckipsd non-coding downstream 68363 941836 ~ 943526 (+)
G299734 NA non-coding downstream 80962 954435 ~ 990707 (+)
G299735 NA non-coding downstream 92057 965530 ~ 1006953 (+)
G299773 hyal2 non-coding downstream 381593 1255066 ~ 1298909 (+)
G299787 NA non-coding downstream 398674 1272147 ~ 1272673 (+)
fbxo42 fbxo42,LOC107719051,LOC107656898 other upstream 479 863258 ~ 872756 (+)
LOC113539702 LOC108281106 other upstream 28365 842853 ~ 844870 (+)
mfap2 mfap2 other upstream 68137 758509 ~ 805098 (+)
LOC117599902 NA other upstream 146313 678917 ~ 726922 (+)
cdkn1a cdkn1a other upstream 352292 515540 ~ 520943 (+)
erc2 erc2,LOC107582387,LOC108414413,LOC107694874,LOC107699320 other downstream 574969 1448442 ~ 1494645 (+)
LOC117599925 NA other downstream 623387 1496860 ~ 1499172 (+)
mon1a mon1a other downstream 1179610 2053083 ~ 2060641 (+)
camkvb camkv,LOC108414427,LOC107718199,LOC107685970,LOC107715795,LOC107659532,LOC107576418 other downstream 1268049 2141522 ~ 2188917 (+)
LOC113539549 LOC108254930 other downstream 1842189 2715662 ~ 2723581 (+)

Expression


Co-expression Network