G299735


Basic Information

Item Value
gene id G299735
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 965530 ~ 1006953 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU355200
tcctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctcgctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctcgctcactctgtctctctctctctctctctctctctctc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU355200 True 211 lncRNA 0.51 2 965530 1006953

Neighbor

gene id symbol gene type direction distance location
si:ch1073-335m2.2 LOC108254705,LOC107737932 coding upstream 38971 906429 ~ 926559 (+)
fblim1 fblim1,LOC107719030,LOC100709954 coding upstream 62949 888372 ~ 902581 (+)
LOC113539452 NA coding upstream 77180 884715 ~ 888350 (+)
slc25a34 slc25a34,LOC102777532 coding upstream 81984 875393 ~ 883546 (+)
sdhb sdhb,LOC107656920,LOC105905141,LOC104949017,LOC100705239 coding upstream 172477 786355 ~ 793053 (+)
LOC113539455 LOC108444095 coding downstream 1896 1008849 ~ 1083835 (+)
LOC113539532 wu:fd14a01,LOC108444093,LOC108444092,LOC108254796,LOC108443910,LOC108443907 coding downstream 81900 1088853 ~ 1098976 (+)
LOC113539531 wu:fd14a01,LOC108444093,LOC108444092,LOC108254796,LOC108443910,LOC108443907 coding downstream 95873 1102826 ~ 1112909 (+)
LOC117595666 LOC108444092,LOC108444093,LOC108254796,LOC108443907 coding downstream 110897 1117850 ~ 1129548 (+)
LOC117599896 wu:fd14a01,LOC108254796,LOC107705004,LOC108443910,LOC107571573 coding downstream 132655 1139608 ~ 1150910 (+)
G299659 nckipsd non-coding upstream 22004 941836 ~ 943526 (+)
G299719 NA non-coding upstream 92057 873235 ~ 873473 (+)
G299695 NA non-coding upstream 117808 845468 ~ 847722 (+)
G299708 NA non-coding upstream 126615 838363 ~ 838915 (+)
G299679 NA non-coding upstream 156180 808159 ~ 809350 (+)
G299773 hyal2 non-coding downstream 248113 1255066 ~ 1298909 (+)
G299787 NA non-coding downstream 265194 1272147 ~ 1272673 (+)
G299786 NA non-coding downstream 271895 1278848 ~ 1301404 (+)
G299833 rad54l2 non-coding downstream 349369 1356322 ~ 1356838 (+)
G299851 NA non-coding downstream 401549 1408502 ~ 1437257 (+)
fbxo42 fbxo42,LOC107719051,LOC107656898 other upstream 92774 863258 ~ 872756 (+)
LOC113539702 LOC108281106 other upstream 120660 842853 ~ 844870 (+)
mfap2 mfap2 other upstream 160432 758509 ~ 805098 (+)
LOC117599902 NA other upstream 238608 678917 ~ 726922 (+)
cdkn1a cdkn1a other upstream 444587 515540 ~ 520943 (+)
erc2 erc2,LOC107582387,LOC108414413,LOC107694874,LOC107699320 other downstream 441489 1448442 ~ 1494645 (+)
LOC117599925 NA other downstream 489907 1496860 ~ 1499172 (+)
mon1a mon1a other downstream 1046130 2053083 ~ 2060641 (+)
camkvb camkv,LOC108414427,LOC107718199,LOC107685970,LOC107715795,LOC107659532,LOC107576418 other downstream 1134569 2141522 ~ 2188917 (+)
LOC113539549 LOC108254930 other downstream 1708709 2715662 ~ 2723581 (+)

Expression


Co-expression Network