G299787


Basic Information

Item Value
gene id G299787
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 1272147 ~ 1272673 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU355306
TAGAGCTCCAGGAGCGGGGTGATGGGGAGACGGGAGCTCGAGCGGAGCTGATGTGTGAACGCCGCAGCACCGGAAGTGCCGGTTACGTGTGTCGTGTGTCGTGTGTGCGCGCGTTACTCACGTGTAGTGCTGCGGGAAGGTGAGGCTCTCCACTCCGCTCCACGGCACGCTGAAGATCAGGATGATGAGCTGAACGCTTAGCAAACACACGACGCTGAAGGACTGAGTCCGTATCGCCATGttccattaacacacacacacacacacacgcgcgcgcgcgcagaAGAACGGAGGGGAAAAACACTGCTGAAAAAGGATTTCACCGAGGAAAGGAGACGTGATATCCGGGTGTGTGCAGCACCGAGGCTCCTTTAGTGCTGAAAAgtgtggaataaataaataaatagatgaatAAAGGAATGCGAGCGGTGAGATGAGGAGGAGAAAGCTGACGCTCTGATTAGTGAGGATGCCGGGAGGAGACTGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU355306 True 487 lncRNA 0.55 2 1272147 1272673

Neighbor

gene id symbol gene type direction distance location
LOC113539456 LOC108254796,LOC108443910,LOC108444093,LOC108444092,LOC107575389 coding upstream 47858 1211519 ~ 1224289 (+)
LOC113539523 LOC108254796,LOC108443907,LOC108444093,LOC108444092,LOC108254798 coding upstream 81849 1179339 ~ 1190298 (+)
LOC113539522 LOC108444092,LOC108443907,LOC108254796,LOC108444093 coding upstream 96774 1164088 ~ 1175373 (+)
LOC117599896 wu:fd14a01,LOC108254796,LOC107705004,LOC108443910,LOC107571573 coding upstream 121237 1139608 ~ 1150910 (+)
LOC117595666 LOC108444092,LOC108444093,LOC108254796,LOC108443907 coding upstream 142599 1117850 ~ 1129548 (+)
LOC117599924 NA coding downstream 41034 1313707 ~ 1314702 (+)
LOC113539530 LOC108254765 coding downstream 67772 1340445 ~ 1344256 (+)
bap1 bap1 coding downstream 89799 1362472 ~ 1372744 (+)
bsnb LOC108414386,LOC108254756,LOC107751196,LOC107743257,LOC107579790,LOC107694876 coding downstream 103806 1376479 ~ 1444625 (+)
ninj1 ninj1,LOC108247379,LOC107694872,LOC106565158 coding downstream 335776 1608449 ~ 1620350 (+)
G299735 NA non-coding upstream 265194 965530 ~ 1006953 (+)
G299734 NA non-coding upstream 281440 954435 ~ 990707 (+)
G299659 nckipsd non-coding upstream 328621 941836 ~ 943526 (+)
G299719 NA non-coding upstream 398674 873235 ~ 873473 (+)
G299695 NA non-coding upstream 424425 845468 ~ 847722 (+)
G299786 NA non-coding downstream 6175 1278848 ~ 1301404 (+)
G299833 rad54l2 non-coding downstream 83649 1356322 ~ 1356838 (+)
G299851 NA non-coding downstream 135829 1408502 ~ 1437257 (+)
LOC117599906 NA non-coding downstream 328020 1600693 ~ 1604586 (+)
G299862 NA non-coding downstream 348127 1620800 ~ 1622584 (+)
fbxo42 fbxo42,LOC107719051,LOC107656898 other upstream 399391 863258 ~ 872756 (+)
LOC113539702 LOC108281106 other upstream 427277 842853 ~ 844870 (+)
mfap2 mfap2 other upstream 467049 758509 ~ 805098 (+)
LOC117599902 NA other upstream 545225 678917 ~ 726922 (+)
cdkn1a cdkn1a other upstream 751204 515540 ~ 520943 (+)
erc2 erc2,LOC107582387,LOC108414413,LOC107694874,LOC107699320 other downstream 175769 1448442 ~ 1494645 (+)
LOC117599925 NA other downstream 224187 1496860 ~ 1499172 (+)
mon1a mon1a other downstream 780410 2053083 ~ 2060641 (+)
camkvb camkv,LOC108414427,LOC107718199,LOC107685970,LOC107715795,LOC107659532,LOC107576418 other downstream 868849 2141522 ~ 2188917 (+)
LOC113539549 LOC108254930 other downstream 1442989 2715662 ~ 2723581 (+)

Expression


Co-expression Network