G299862


Basic Information

Item Value
gene id G299862
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 1620800 ~ 1622584 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU355401
aatttattatttttttttgtaaaattggtACAAAAAACCAAGATAAGGCACTCTGTTACATGTGACCATTGCATTAGAGTCTGAACAAAGTTTCATAAAAATATCAATGTTTTATGTAAAACCTCAGATTTCATAAATGCCTTTATTTTAAAACGTTGAAAAAAAGTAGCCATGTTTTTTCACACTGCTATAAGTGAGGAACAGCAATAAGCAGGAGCTTATCAGCATGAGCTCACTAATTACTGGCTTCCTGGTACAATCAATTCAGCCGCAGCAGCAGCTCCACTTTGCGTCACTTAACCGTTCCTGCTCTTATACGATAATCACGCTGTGTGAAATAAGTGTGTGCCGACTACATGGTtctcaccctttttttttttatctaaggCTGTCATTTTTACCCTCCAGCCTGCAGGTAAAAGAAATCTACCTGCGTAAGATGGCCGTGAATTGCTACTGGCTGGCACAGATTTGATTGTAATCATGATTTATAAAGTGTACTATTTTTAAGTACGCACcacttttaataaatttacaaaatgaaaaacgaCTAGCGATATTGAGGACTTGAGATATTTGCAGGGCCCGCTTGGCACCCCAGTGTGGCCGCTGTGTTAGACACTTGGAGTTGATGTTTGTCACTTATGTGGCTCCAGGGCTGTCTCTTTATCCGTATCACCATGCTGctgtcatttaaaaacaaagtttAAGCATAACATTAGTATAATTAAGTATTATTTGCTGTCTAGTGACAGACTGTCATTCATGTTTTAGCCAGTGACTCTGCAACAGAGCGACATTTGGATTCAGATGTCCTCAGTTGTGTGTAAATCAGGGGTGACACAATGAAACGactggctcgaatgattcctcggaccgtGCTGGAACGCAGGGTTACAGACGCAGCTTGGTCAGGCCTTGTCTTGTAGTGTAGATCAGGCTAAAACAGCCAGCTAGTGTTTGCATTAGTGACGGTAATTTAAAGTGTCCACAATAATACCTTGGTGATATTTTTCTGATATATTGTCTGACTGATTATCGGCACATCCCTAGTCCACAGCAGCACCTCGTGGCAGAGCATCATGAGCTCCTTAGTGCCTTTTACttgaaaaaaattttaaaattcagtaaaaattAGTGCACATGGAAGTCCCTGTGAAGCCACATACATGTATACgatgtgaaatattttaaaaaaaatctgtaatggTGTCCAAACCCAGTGTTTCCTCAAATCTAacatatttatccatttataaacCCACGCGAATGTGCCCCGGATTCAgaacttttgtttgtttttttccccaaaaagtgaCAAAATGAGCATTACTGTCATACACAGTAATGCCAGATTGATCTGAGCCACCAGTGTaaactctaacacacacctcagtgaaGTCATTCGAGCCGGCACTGTTCTGTACTCCACACACTCGGAGAGAAAACAAAACGGAAAGATGTAGTTTTCTAGTGGAAAAAATAACGTTAACCAAAAGGAGAGAGACGTTTTAAACAGCTTTGGGCGTATTCCGTTATGTCATTTACGGTATGTACACaatcctttaaaaaaactttgtaaGGCACTTTAAACCTGCTGTGTTTTTCCATGTTAGtgtaaaactgttaaaaactgTAACAGTGTGTGAGCTTATCTCCCCAGACCATCTTCTGTGTACCAGATCAGAACCTCTCGGACCTTCCTCCCGATCCCGAGAGCGGCGAAGCCCAGAGCGCTGCTCGAACCCGACGCCGCC

Function

GO:

id name namespace
GO:0019825 oxygen binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU355401 True 1757 lncRNA 0.40 2 1620800 1622584

Neighbor

gene id symbol gene type direction distance location
ninj1 ninj1,LOC108247379,LOC107694872,LOC106565158 coding upstream 450 1608449 ~ 1620350 (+)
bsnb LOC108414386,LOC108254756,LOC107751196,LOC107743257,LOC107579790,LOC107694876 coding upstream 176175 1376479 ~ 1444625 (+)
bap1 bap1 coding upstream 248056 1362472 ~ 1372744 (+)
LOC113539530 LOC108254765 coding upstream 276544 1340445 ~ 1344256 (+)
LOC117599924 NA coding upstream 306098 1313707 ~ 1314702 (+)
cacna1da cacna1da,LOC108281043 coding downstream 37624 1660208 ~ 1752294 (+)
cacna2d3 cacna2d3,LOC108254724,LOC107751209,LOC107743247,LOC107582378 coding downstream 138280 1760864 ~ 1812936 (+)
slc38a3a slc38a3,LOC107715801,LOC107685967,LOC107718202,LOC106950485 coding downstream 256019 1878603 ~ 1920454 (+)
gnai2a gnai2,LOC103358732,LOC104930488,LOC101487808 coding downstream 303593 1926177 ~ 1977132 (+)
inka1a LOC108280975 coding downstream 371629 1994213 ~ 1998435 (+)
LOC117599906 NA non-coding upstream 16214 1600693 ~ 1604586 (+)
G299851 NA non-coding upstream 183543 1408502 ~ 1437257 (+)
G299833 rad54l2 non-coding upstream 263962 1356322 ~ 1356838 (+)
G299786 NA non-coding upstream 319396 1278848 ~ 1301404 (+)
G299773 hyal2 non-coding upstream 321891 1255066 ~ 1298909 (+)
G299916 NA non-coding downstream 3509 1626093 ~ 1640428 (+)
G300447 NA non-coding downstream 198037 1820621 ~ 1822339 (+)
G300467 NA non-coding downstream 232117 1854701 ~ 1857401 (+)
G300479 NA non-coding downstream 297943 1920527 ~ 1924467 (+)
G300487 NA non-coding downstream 320842 1943426 ~ 1944198 (+)
LOC117599925 NA other upstream 121628 1496860 ~ 1499172 (+)
erc2 erc2,LOC107582387,LOC108414413,LOC107694874,LOC107699320 other upstream 126155 1448442 ~ 1494645 (+)
fbxo42 fbxo42,LOC107719051,LOC107656898 other upstream 748044 863258 ~ 872756 (+)
LOC113539702 LOC108281106 other upstream 775930 842853 ~ 844870 (+)
mfap2 mfap2 other upstream 815702 758509 ~ 805098 (+)
mon1a mon1a other downstream 430499 2053083 ~ 2060641 (+)
camkvb camkv,LOC108414427,LOC107718199,LOC107685970,LOC107715795,LOC107659532,LOC107576418 other downstream 518938 2141522 ~ 2188917 (+)
LOC113539549 LOC108254930 other downstream 1093078 2715662 ~ 2723581 (+)
LOC113539463 adamts9 other downstream 2227977 3850561 ~ 3913086 (+)
cadpsa cadps other downstream 2535648 4158232 ~ 4278673 (+)

Expression


Co-expression Network