LOC117599925


Basic Information

Item Value
gene id LOC117599925
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 1496860 ~ 1499172 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU355411
cccacacacacattgtcgTGCAGCATGAACCCTGGTAGACACTGCAGACACTGGTTTCTTTCAGGTCCTCCACAGGCTTTGCAGTGTTCAGAACAGTTGTTTCCCAGAGATGGTGCAGgcaggagcaggaacagcaCAACGCACAACGTCAACATCGCCCCTACAGGCCAGAGACCAACACAACGTCAACATCGCCCCTACACATCCGAGTCCAACACAACATCAACATCGCCCCTACACATCCGAGACCAGCACAACATCAACATCGCCCCCTACACATCCGAGACCAACACAACGTCAACATCGCCCCCTACACATCCGAGACCAACACAACGTCAACATCGCCCCTACACATCCGAGACCAACACAACATCAACATCGCCCCCTACACATCCGAGTCCAACACAACATCAACATCGCCCCCTACACATCCGAGACCAACACAATGTCAACATCGCC
>TU355413
cccacacacacattgtcgTGCAGCATGAACCCTGGTAGACACTGCAGACACTGGTTTCTTTCAGGTCCTCCACAGGCTTTGCAGTGTTCAGAACAGTTGTTTCCCAGAGATGGTGCAGgcaggagcaggaacagcaCAACGCACAACGTCAACATCGCCCCTACAGGCCAGAGACCAACACAACGTCAACATCGCCCCTACACATCCGAGTCCAACACAACATCAACATCGCCCCTACACATCCGAGACCAGCACAACATCAACATCGCCCCCTACACATCCGAGACCAACACAACGTCAACATCGCCCCCTACACATCCGAGACCAACACAACGTCAACATCGCCCCTACACATCCGAGACCAACACAACATCAACATCGCCCCTACACATCCGAGACCAACACAACATCAACATCGCCCCTACACATCCGAGACCAACACAACATCAACATCGCCCCTACACATCCGAGACCAACACAA
>XM_034314475.1
tccGAGACCAGCACAACATCAACATCGCCCCTACACATCCGAGACCAACACAACATCAACATCGCCCCCTACACATCCGAGTCCAACACAATGTCAACATCGCCCTACACATCCGAGACCAACACAACATCAACATCGCCCCCTACACATCCGAGACCAGCACAACATCAACATCGCCCCTACACATCCGAGACCAACACAACATCAACATCGCCCCTACACATCCGAGACCAACACAACGTCAACATCGCCCCCTACACATCCGAGACCAACACAACATCAACATCGCCCCTACACATCCGAGACCAGCACAACGTCAACATCGCCCTCTACACATCCGAGACCAACACAACGTCAACATCGCCCCTACACATCCGAGACCAACACAACATCAACATCGCCCCTACACATCCGAGACCAACACAACATCAACATCGCCCCTACACATCCGAGACCAGCACAACATCAACATCGCCCCTACACATCCGAGACCAACACAACATCAACATCGCCCCTACACATCCGAGTCCAACACAATGTCAACATCGCCCCTACACATCCGAGACCAACACAACGTCAACATCGCCCCTACAGGCCAGAGACCAGCACAACGTCAACATCGCCCCTACACATCCGAGACCAGCACAACATCAACATCGCCCCTACACATCCGAGTCCAACACAACATCAACATCGCCCCTACACATCCGAGTCCAACACAACATCAACATCGCCCCCTACACATCCGAGACCAACACAATGTCAACATCGCCCCTACACATCCGAGACCAACACAACATCAACATCGCCCCTACACATCCGAGACCAACACAACGTCAACATCGCCCCCTACACATCCGAGACCAACACAACGTCAACATCGCCCCCTACACATCCGAGACCAACACAATGTCAACATCGCCCCTACACATCCGAGACCAACACAACATCAACATCGCCCCTACACATCCGAGACCAACACAACGTCAACATCGCCCCCTACACATCCGAGACCAACACAACGTCAACATCGCCTCCTACAGGCCAGAGACCAGCACAACATCAACATCGCCCCTACACATCCGAGACCAACACAACGTCAACATCGCCTCCTACAGGCCGGAGACCAACATGCAGCTTTGTTACAGATAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU355411 False 459 TUCP 0.54 3 1496860 1498487
TU355413 False 481 TUCP 0.53 2 1496860 1497627
XM_034314475.1 True 1152 mRNA 0.53 4 1497715 1499172

Neighbor

gene id symbol gene type direction distance location
bsnb LOC108414386,LOC108254756,LOC107751196,LOC107743257,LOC107579790,LOC107694876 coding upstream 52235 1376479 ~ 1444625 (+)
bap1 bap1 coding upstream 124116 1362472 ~ 1372744 (+)
LOC113539530 LOC108254765 coding upstream 152604 1340445 ~ 1344256 (+)
LOC117599924 NA coding upstream 182158 1313707 ~ 1314702 (+)
LOC113539456 LOC108254796,LOC108443910,LOC108444093,LOC108444092,LOC107575389 coding upstream 272571 1211519 ~ 1224289 (+)
ninj1 ninj1,LOC108247379,LOC107694872,LOC106565158 coding downstream 109277 1608449 ~ 1620350 (+)
cacna1da cacna1da,LOC108281043 coding downstream 161036 1660208 ~ 1752294 (+)
cacna2d3 cacna2d3,LOC108254724,LOC107751209,LOC107743247,LOC107582378 coding downstream 261692 1760864 ~ 1812936 (+)
slc38a3a slc38a3,LOC107715801,LOC107685967,LOC107718202,LOC106950485 coding downstream 379431 1878603 ~ 1920454 (+)
gnai2a gnai2,LOC103358732,LOC104930488,LOC101487808 coding downstream 427005 1926177 ~ 1977132 (+)
G299851 NA non-coding upstream 59603 1408502 ~ 1437257 (+)
G299833 rad54l2 non-coding upstream 140022 1356322 ~ 1356838 (+)
G299786 NA non-coding upstream 195456 1278848 ~ 1301404 (+)
G299773 hyal2 non-coding upstream 197951 1255066 ~ 1298909 (+)
LOC117599906 NA non-coding downstream 101521 1600693 ~ 1604586 (+)
G299862 NA non-coding downstream 121628 1620800 ~ 1622584 (+)
G299916 NA non-coding downstream 126921 1626093 ~ 1640428 (+)
G300447 NA non-coding downstream 321449 1820621 ~ 1822339 (+)
G300467 NA non-coding downstream 355529 1854701 ~ 1857401 (+)
erc2 erc2,LOC107582387,LOC108414413,LOC107694874,LOC107699320 other upstream 2215 1448442 ~ 1494645 (+)
fbxo42 fbxo42,LOC107719051,LOC107656898 other upstream 624104 863258 ~ 872756 (+)
LOC113539702 LOC108281106 other upstream 651990 842853 ~ 844870 (+)
mfap2 mfap2 other upstream 691762 758509 ~ 805098 (+)
LOC117599902 NA other upstream 769938 678917 ~ 726922 (+)
mon1a mon1a other downstream 553911 2053083 ~ 2060641 (+)
camkvb camkv,LOC108414427,LOC107718199,LOC107685970,LOC107715795,LOC107659532,LOC107576418 other downstream 642350 2141522 ~ 2188917 (+)
LOC113539549 LOC108254930 other downstream 1216490 2715662 ~ 2723581 (+)
LOC113539463 adamts9 other downstream 2351389 3850561 ~ 3913086 (+)
cadpsa cadps other downstream 2659060 4158232 ~ 4278673 (+)

Expression


Co-expression Network