G300479


Basic Information

Item Value
gene id G300479
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 1920527 ~ 1924467 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU356290
tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgggtgatctCTCAGTGAAACGTCAGCATCAGTACAGCAAGTATTACTTACCAAATTTTTGTGCGTTtgtatatgtgtctgtctgtcaggcAAAATAACCCtggatgatgacgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgataatgatgactCAGTAGTGAGAGCAGTGATATGTGgactcacacacttcctgctagATAATATTCTTGCATTTTTCTCCCCTCAAACTGACCCTTAACACAAATTTAAACTAAACCAGTCCAGTTTGCTACATTGGCCTGATTGTGACCTCTGccctttgacctttgaccccaggTACAGAAAGACCTGGGGCCACCAAAGCAGGGTACTTATTCAAGTTGATAAGGATTACCCCGATGGGAGAGCTGTGTGTTTTCGATAGTGTAGGTGCCTGTCCCTTTCgatgactttctctctctctctctttctctctctctctctctctctctctctctctctctctctttcttctctctgtctctctctctctcttgatgtgGCAATAATCTCTGCAACAACCGAGAAACACTGGAGTGAGAGGTCGTTGCCATGACAGCgccatatacatatatatatatatatataagtagaGCACATTAACCCTGTGACACAATATGCAAACTGTAAATAACCTGcatcagcaattttttttatatgtatggATTTATGTATATATCACAGAGTATATGGATAAATATACAGCTATATGTGATAGGGATGTGTTTGATATCTGCCCAAGAGCACATCGTTCCTGTAATTTAATCGCTctagattattaaaaaaaaaggcacatgaaAAACTGAGGAAGAACGATCTACTGCAGAgcacaaacagaaaacacagattttttttttctttgacccTAAGACTGAATGTAAAGTTGGGAAAGGAGTGTATACAGAAAGTacaaagtaaatataaagagcaaataaaaaaaaaaaaaagtttaacatgCTAAACTGACAGGGTTTTCTCCTCCAGTGAAGACACGACAGGACTGTGTGAGAggtgtaggagagagagagagagagagagagagagagaggataggtATACAGTAGAAAAACATTCCAGGATGGATGAGTCGAGAGCTATAACCTCGCTGCTGCAACCTTTTGCTCGCTCTTTCTATATCGATTCCGTGTGTCGTTGTCACATGCTCATGCTCATGAACTCACGGAGTCGTGGAGATTTTCGCTCTGTCAATCACGCAGACTTGAAGTGATACAactcctaaaaaaaaatgcatcacagCACAAAGATCACACTGTGgtgtcttataccacagtgctgttgaattctggattgtgattggtcagcaggtgttgattacttttctataacagcagctctgacacttcACTAATAATAACCGGATTGcaaaacgtgtaattgttgatatggtgaagttaacatttaaatgtaaatttaacatttatggaaggagtctccagtgtcagcgctctgtaacagtcagaggtaaagccgtaactttatgttttttgtcttaataacttagagagagaaaaattagaggctgatgagggaacgactttttatagctgctgtaacatttactctaaatggataaaaagtatgacgttcttttataaatgaaaaattgtagtCGTTGgaaagttgctgtggtgtaagaggaataaaacacttttgtacatgctgttataggaaaagaatcaacttcagggtagtaacagtaactccgcttcttTACTCCACCTggtcgttgattattttgctataacagcatgacacggagtgttttatttcttacgtAACATGTAAGAGCCTGTCAGATTCAACAGACCACTTAATCTTGGTTTTGGGGGCGGGGCATGTAGAGATGGGAgtgtttctaatttgcatattcagagAATCTGGATTGATTGCTGAAAGGGGAAAAGTTCGGCGCATTTTTTCGGTGTAATGACATTTTATGGGGTTTTCAATCAGGcttaatatttctgaaaacagaCAGGACATGATTTTACAATAACTGTCATACACTTAGGAGCATAATCTGTATTCACTTCTCTTCTGGTTCGAAATCTTCAGGTCGCAGCAACATAAAGAACCAGATGGTGTTTAACAATAAGGCAAATAGTTTGCTTCAGATAAATCGTTCTAATCCTGATCAAGTCACAGGAATAATTCTGGGAatgaatttcagaattaaaGCGAGTTATTTAATCATGAGCATGATCGTTGGATAACGACTGAACACAGTAGCTTTAGCACTTTCTGCTACAAAGCACAATTTAGAGCCATTAAAACACTTAACCTACTATGGAGACCAACTATATgattaaaaatctataatatattttataggCAGAGTTCTACAGCCTTTGTACTACTAAATGTTTGtaagaaaggtgtgtgtgtgtgtgtgtgtgtgtgagtttaacCTCTTGGATATATAATCTATATGCTCTATAGAGTGCTGAAGGTGTAGTATAACACTCAATACATATGAGacgtgtgtgtatttacaccCGTGGTACTTTTTCACTAGTCGCTGTAGTCGTGTTCGGTGATTAGACAGATCATTAGATGGATCGAAGTCTTAAACGTGTCTTTGTGTCCCGTGTCAGTGGTTTAAATATCCaagctgctggtgtgtgtgaggtgaacATACAGTCACACACTGCAAAAGCAAGAGGAAATGTCTTGAATATGGacaaatgtatgtaatatttcatatgatcatattattattaatcaaatattaGACTATTAaccctatttctagacatttttttttatttcaagctTTAATCTGTTGTTCTTaatctattggcagataattttgatTATAAATGCTcgaaataaaaaaagatctgccaatagaacaagactatttcactTTTGAAACGAGAAAAAATATCTGGAAATACTATAGAAAGGGTTTTttgtaatctcataataagaaatgcTAGATACCTCTGACTATATTCAAgctatttttcactttattttgcagtgccattatattaataataaaaattccaGCATTATGCGCTTAAAACCTGTGTAgtagcacatttttaatcccAGTGTAAAGTCTTGTATTTAAGAAGCacagaaaagtaaataaaatatgaaataaagtaCAAATGAATATGTTTATAGATCAGCTCTTGCATCTGCAAATGATTATTATACCCATTTATTCAGGGCTTGAGGCAAAATCATCCCAGAGagcagttttatttctttatgaatatatttttgattAACTCTAATATTCATGTGCCTGTATATTTTCATATCAGGATCGTTGTTGTTTTAACTGCAAGTGTGACAGTATAATATATAACCTCAGTACAGGCTCAGTTATGAAAGATTTATTAGATGATGTTGAGTTGATGTTTTATTAGGACATTTATGAACAGGTTTAGgtcatgtgtttaaaaaatggagtgactaaaagtgtttttattttctagcagtgtatttgtgtgtagtaAATGTGTCGACTTAATCTCTGTATTCTTGACTTaatgaagcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatacgagTTCATGACTGACATGTTGGCATTTATATATGATGAAAATAATGATGACAATAATGATAAACCCTTTATATCCCTCGTGTAGTTTGTACACTGTAAATAGGCAGAGGTTTAGTCTGATGATTAAAACAAgctataataatttttaaaagtgctttttttttttaaagtaataaaaagccagttaaatgtcttttatttttctttattcctcatatatTGAGTACATGGCTGGCGGGTATTGTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU356290 True 3899 lncRNA 0.36 3 1920527 1924467

Neighbor

gene id symbol gene type direction distance location
slc38a3a slc38a3,LOC107715801,LOC107685967,LOC107718202,LOC106950485 coding upstream 73 1878603 ~ 1920454 (+)
cacna2d3 cacna2d3,LOC108254724,LOC107751209,LOC107743247,LOC107582378 coding upstream 107591 1760864 ~ 1812936 (+)
cacna1da cacna1da,LOC108281043 coding upstream 168233 1660208 ~ 1752294 (+)
ninj1 ninj1,LOC108247379,LOC107694872,LOC106565158 coding upstream 300177 1608449 ~ 1620350 (+)
bsnb LOC108414386,LOC108254756,LOC107751196,LOC107743257,LOC107579790,LOC107694876 coding upstream 475902 1376479 ~ 1444625 (+)
gnai2a gnai2,LOC103358732,LOC104930488,LOC101487808 coding downstream 1710 1926177 ~ 1977132 (+)
inka1a LOC108280975 coding downstream 69746 1994213 ~ 1998435 (+)
mst1rb mst1r,mst1rb,LOC107677494,LOC107686010 coding downstream 138377 2062844 ~ 2088852 (+)
LOC113539428 LOC108255194 coding downstream 602252 2526719 ~ 2568406 (+)
grm2b LOC108281021,LOC108435310,LOC107575639,LOC107659540,LOC107715788 coding downstream 653907 2578374 ~ 2607935 (+)
G300467 NA non-coding upstream 63126 1854701 ~ 1857401 (+)
G300447 NA non-coding upstream 98188 1820621 ~ 1822339 (+)
G299916 NA non-coding upstream 280099 1626093 ~ 1640428 (+)
G299862 NA non-coding upstream 297943 1620800 ~ 1622584 (+)
LOC117599906 NA non-coding upstream 315941 1600693 ~ 1604586 (+)
G300487 NA non-coding downstream 18959 1943426 ~ 1944198 (+)
LOC113539753 NA non-coding downstream 83143 2007610 ~ 2021578 (+)
G300649 NA non-coding downstream 269821 2194288 ~ 2195719 (+)
LOC117599869 NA non-coding downstream 395580 2320047 ~ 2325625 (+)
G300688 NA non-coding downstream 429377 2353844 ~ 2354096 (+)
LOC117599925 NA other upstream 421355 1496860 ~ 1499172 (+)
erc2 erc2,LOC107582387,LOC108414413,LOC107694874,LOC107699320 other upstream 425882 1448442 ~ 1494645 (+)
fbxo42 fbxo42,LOC107719051,LOC107656898 other upstream 1047771 863258 ~ 872756 (+)
LOC113539702 LOC108281106 other upstream 1075657 842853 ~ 844870 (+)
mfap2 mfap2 other upstream 1115429 758509 ~ 805098 (+)
mon1a mon1a other downstream 128616 2053083 ~ 2060641 (+)
camkvb camkv,LOC108414427,LOC107718199,LOC107685970,LOC107715795,LOC107659532,LOC107576418 other downstream 217055 2141522 ~ 2188917 (+)
LOC113539549 LOC108254930 other downstream 791195 2715662 ~ 2723581 (+)
LOC113539463 adamts9 other downstream 1926094 3850561 ~ 3913086 (+)
cadpsa cadps other downstream 2233765 4158232 ~ 4278673 (+)

Expression


Co-expression Network