G300700


Basic Information

Item Value
gene id G300700
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 2385983 ~ 2386221 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU356549
CGCTTTTCCTGCATTTACGGAATGCCCTAAATCCACTGAGTTAATAAGCCTTGAATGGTCCCGGCAATTACAGTGAATTGCCTTTAGCCAGGCACAAATTCATagtaattatgttttatttttgcccAGAGGATCTTCACAGAgtttaaatcagtgtttaatgatGGCTTAATAACCTCTTAAGAGAACTTGGTTCTTGTTaagtttctcttcttcctccagTCTTGCAGTTGATAAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU356549 True 239 lncRNA 0.38 1 2385983 2386221

Neighbor

gene id symbol gene type direction distance location
mst1rb mst1r,mst1rb,LOC107677494,LOC107686010 coding upstream 297131 2062844 ~ 2088852 (+)
inka1a LOC108280975 coding upstream 387548 1994213 ~ 1998435 (+)
gnai2a gnai2,LOC103358732,LOC104930488,LOC101487808 coding upstream 408851 1926177 ~ 1977132 (+)
slc38a3a slc38a3,LOC107715801,LOC107685967,LOC107718202,LOC106950485 coding upstream 465529 1878603 ~ 1920454 (+)
cacna2d3 cacna2d3,LOC108254724,LOC107751209,LOC107743247,LOC107582378 coding upstream 573047 1760864 ~ 1812936 (+)
LOC113539428 LOC108255194 coding downstream 140498 2526719 ~ 2568406 (+)
grm2b LOC108281021,LOC108435310,LOC107575639,LOC107659540,LOC107715788 coding downstream 192153 2578374 ~ 2607935 (+)
si:ch211-213o11.11 LOC108281028 coding downstream 235291 2621512 ~ 2629721 (+)
zgc:172270 LOC108281023 coding downstream 249093 2635314 ~ 2641323 (+)
sypl2a sypl2 coding downstream 297828 2684049 ~ 2696967 (+)
G300689 NA non-coding upstream 30738 2355033 ~ 2355245 (+)
G300688 NA non-coding upstream 31887 2353844 ~ 2354096 (+)
LOC117599869 NA non-coding upstream 60358 2320047 ~ 2325625 (+)
G300649 NA non-coding upstream 190264 2194288 ~ 2195719 (+)
LOC113539753 NA non-coding upstream 364405 2007610 ~ 2021578 (+)
G300723 NA non-coding downstream 50145 2436366 ~ 2518205 (+)
G300827 NA non-coding downstream 288146 2674367 ~ 2676370 (+)
G300838 NA non-coding downstream 330479 2716700 ~ 2717082 (+)
G300837 NA non-coding downstream 338767 2724988 ~ 2725736 (+)
G300839 zbtb40 non-coding downstream 340043 2726264 ~ 2726592 (+)
camkvb camkv,LOC108414427,LOC107718199,LOC107685970,LOC107715795,LOC107659532,LOC107576418 other upstream 197066 2141522 ~ 2188917 (+)
mon1a mon1a other upstream 325342 2053083 ~ 2060641 (+)
LOC117599925 NA other upstream 886811 1496860 ~ 1499172 (+)
erc2 erc2,LOC107582387,LOC108414413,LOC107694874,LOC107699320 other upstream 891338 1448442 ~ 1494645 (+)
fbxo42 fbxo42,LOC107719051,LOC107656898 other upstream 1513227 863258 ~ 872756 (+)
LOC113539549 LOC108254930 other downstream 329441 2715662 ~ 2723581 (+)
LOC113539463 adamts9 other downstream 1464340 3850561 ~ 3913086 (+)
cadpsa cadps other downstream 1772011 4158232 ~ 4278673 (+)
LOC113539599 tmem110,mustn1,LOC108435844,LOC107746891,LOC107656046,LOC107755187,LOC103359875,LOC107091502 other downstream 2064819 4451040 ~ 4469196 (+)
ptprga ptprg,LOC107752167,LOC106583020 other downstream 2824423 5210644 ~ 5471561 (+)

Expression


Co-expression Network