G300827


Basic Information

Item Value
gene id G300827
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 2674367 ~ 2676370 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU356696
CTACAATTTTATTAGCGCATTGAtttgtaacaaaaaaacatacccCCCGCCcccttctttttttcactccacTGCAAGTATTGATGTTCTGTGGCATGTACAGAACTGTAGAAATAATTGTGTATCCTGAATtgacagaggaaaagaaaaaaaaaacagtataaagaGTGGACTCCGGGCTGGAAAAAAAGCAGCCAGGCTGCTGTTACGTTCGCTGTTATCCATCCGCACAGAGAACATCAGAGAACATCAGTCAGGCCTGCGCAGAACTGCTCTAGATGTCCTTGATGACGTCCTCCAGCTCCTCTTTTGTGTACATGTGGAACGTCTTGTTGGGCTCTATTGTAGCCTCGATGTTAGTAGCGTTCAGCTTCTCCTCCATAACCTGCTTCAGGATGGTGAGGGAAGACTTAATGGCTTCTTTTAACGTCATGGActggaacagaaaaaaaaagtaaaaaaaaaataaaataataataatcatttgaCCATAAACAAACCTTTACTCAGCGTCACTGCTCATGTATACCTGACTCGCTGCTCATTACataatattctctctcttttttttttttttgccttttaatCAACACTAAGACTGGATATCCAGACAGAACAAAACGAGTAGGAGTGGAAGTATCCTGTAATTAATCTGTTTATCTGGAAGCAAAGAGCAAACCTAAACTCCATGTGAATGGTTATCATACTGCAGGGCCACATGAGCTGTCGACCTGGTGATCACTGGGGGAAGTTATGAAGAACCGGAAAATGGGCAGGGTGGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU356696 True 782 lncRNA 0.41 2 2674367 2676370

Neighbor

gene id symbol gene type direction distance location
zgc:172270 LOC108281023 coding upstream 33044 2635314 ~ 2641323 (+)
si:ch211-213o11.11 LOC108281028 coding upstream 44646 2621512 ~ 2629721 (+)
grm2b LOC108281021,LOC108435310,LOC107575639,LOC107659540,LOC107715788 coding upstream 66432 2578374 ~ 2607935 (+)
LOC113539428 LOC108255194 coding upstream 105961 2526719 ~ 2568406 (+)
mst1rb mst1r,mst1rb,LOC107677494,LOC107686010 coding upstream 585515 2062844 ~ 2088852 (+)
sypl2a sypl2 coding downstream 7679 2684049 ~ 2696967 (+)
atxn7l2a atxn7l2,LOC106565127 coding downstream 28333 2704703 ~ 2714151 (+)
ldlrad2 ldlrad2 coding downstream 78406 2754776 ~ 2761167 (+)
chchd4a chchd4,LOC107574929,LOC107718204,LOC102783083 coding downstream 87292 2763662 ~ 2766405 (+)
dnah1 dnah1 coding downstream 110515 2786885 ~ 2827062 (+)
G300723 NA non-coding upstream 156162 2436366 ~ 2518205 (+)
LOC113539650 NA non-coding upstream 287266 2375972 ~ 2387101 (+)
G300700 NA non-coding upstream 288146 2385983 ~ 2386221 (+)
G300689 NA non-coding upstream 319122 2355033 ~ 2355245 (+)
G300688 NA non-coding upstream 320271 2353844 ~ 2354096 (+)
G300838 NA non-coding downstream 40330 2716700 ~ 2717082 (+)
G300837 NA non-coding downstream 48618 2724988 ~ 2725736 (+)
G300839 zbtb40 non-coding downstream 49894 2726264 ~ 2726592 (+)
G300840 NA non-coding downstream 50934 2727304 ~ 2727511 (+)
G300841 zbtb40,LOC107659551,LOC107575478,LOC107582425 non-coding downstream 52114 2728484 ~ 2729607 (+)
camkvb camkv,LOC108414427,LOC107718199,LOC107685970,LOC107715795,LOC107659532,LOC107576418 other upstream 485450 2141522 ~ 2188917 (+)
mon1a mon1a other upstream 613726 2053083 ~ 2060641 (+)
LOC117599925 NA other upstream 1175195 1496860 ~ 1499172 (+)
erc2 erc2,LOC107582387,LOC108414413,LOC107694874,LOC107699320 other upstream 1179722 1448442 ~ 1494645 (+)
fbxo42 fbxo42,LOC107719051,LOC107656898 other upstream 1801611 863258 ~ 872756 (+)
LOC113539549 LOC108254930 other downstream 39292 2715662 ~ 2723581 (+)
LOC113539463 adamts9 other downstream 1174191 3850561 ~ 3913086 (+)
cadpsa cadps other downstream 1481862 4158232 ~ 4278673 (+)
LOC113539599 tmem110,mustn1,LOC108435844,LOC107746891,LOC107656046,LOC107755187,LOC103359875,LOC107091502 other downstream 1774670 4451040 ~ 4469196 (+)
ptprga ptprg,LOC107752167,LOC106583020 other downstream 2534274 5210644 ~ 5471561 (+)

Expression


Co-expression Network