LOC113539549 (LOC108254930)


Basic Information

Item Value
gene id LOC113539549
gene name LOC108254930
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 2715662 ~ 2723581 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU356705
AGTTCATTGTGGTTTTAAACTTAAATGCTTGAATAAAGGTCAACTTTGTATttgatgtatttgtgtatttattctaAAGGACACTACATTTAAAGCCGATTTCAACTTAATGGGGACGAGAACACTTTTTGGCACAAAGTTTTCCTAAAACTATCGTACCATATTGTTACACTTAGTG
>XM_026935358.2
GCCCACAGACACGACACTTCCCCGTAACTCGTGACGTAActcttatttattgtttttttttcctgtcatgGTATTTAAAATGTCCCTTGTGACTGTGTCCATCCAGGACCGAGTTGCTGTAAGGAGTGTCAGTCCATGTTTAACGTCCTCAACCCTGTCTAAACTTGTATTTACTGGAAGGACGCGCGCGCACCAGCCGCACCCGGAAGTGGCACTGCTCCGTTCCGTGTTGTGTTTCGGCTCGCATGTGGCCTCCGTGGCAGAGCaataagaaggagaagaagaagaagaaggagcaggaggaggaggaagagaagaagaagaaaaagaagaaggagactCTCGGTCTAACATGATCTCAGCACGGACAGCGCCTCACGCTCGGTGTTTCTGGTCAGAAGAGCTTTGGCTCGTGTGTTCGGCTCCAACCTGAGATACACTaaccaggagagagagagagagagagagagagagagatgcggTCGGCAGTGGAGTACAGTCCGGTCGGTGAGGGGCTCGGGATGCGGGAGTACTGGCTGTACGCGTGCATGCGCAAAATCGCTCTCGTGGCCGCGCATTGTGTCGCTCTGGGCTTCACCGCGCTCATCGGCGTCCTGTCCCGACCCGGAACAAgtCTCTTCTCTTGGCACCCGCTCTGCATGTCACTCGGGTTTTGCCTGTGCATGACGGAGGGGATCCTGCTCTTCTCGGGTGAGGGCTCTCCATGCTGCTTAAAGTCCCGGAAAGGGAAGATCCGCACACACTGGTTCCTGcaggtgctgctgctgcttttcgCAGCCATGGGCCTCGGCTTCATGGTGGCCAGTAAGAGGAAGTCGGAGCACCCCCACCTGGAGACATGGCACAGCCTGCTGGGCGTCGGGACGCTGGTGGCTACGGCGCTGCAGGTGGCCTGCGGCATGTGCCTGCTGTTCCCCAAGCTCATCCACACCGTATCCGTGCCCCGGCTGCGGCTCTACCACGCCACCTGCGGCCTCGTGGCCTACCTGCTGGCCACCGTCACCGTCACAGCGGCCTTATTCAGCGACTGGTTCCAGGCCACCGTCAAGGGGCCGATTTGGTACGCCTTCCTGCTCCTGCCTCCGTTCCCTGCTCTGGTGGTGATGAACCAAATCACAAACACCTTCCTGCCTAAGAAGAAGCTAACGACGTGAACCATCATGACAAGCACGAActaacacaatataaaaaaatggacTTATACTGCTGTTTAGGGTTCCAAAATGATCCTCACACTCTCgtggtctttttttttacgACTTGAGTTCACAAGCTGTGATGCAATGTTGAGCTTTTCCAATATGGTGGGACTCATAGCGGtcaatgctaagtgtaattacagtgtaattttaaatgaactgaGATTTTTCATAGTAATCCCTGAAGAAAATTGTTATATTCCTAATAATTTCATCTCATTTCCACTATCACTAAGCCTTTACTTCGTGTGTATTAAACACTTAACAACCAGATGCAAGATAACTAAGCTAACACTTAGCTTCAGTCAATCGCTTATGGTTGTCATTCATATTTCGCACAACTCTAGCATGTTAAATCgacatatttatgttttgtttgaaGACACTATATAAAACTAGCTGCACTTGAAGTGTGACGTATCTCCTGTGAAAACATACTTGCACATTTTTtaaggtggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcttaaagAAATGATACTTCACTTTAATTCGAGAAGTATGTTTCTGGACGGAATAATGTGTGTACATCTGTACTTTAACAGCTGTATTATGCTTCCTCTTAGACGTGTGTCAGTATCTGATATTTATGATAATTTTCCTAACCTTTTATAACGGTATAGCACAGGAAAGAGTTTTAGCTACAAGCTAGACTTAGCAAGAGTTCAAGTTTGTCAAGTTTTCCTAGCTTTTATGGCACTCTCATGTGGTGAACAGGATTGTTTTATCCTCAGTACGTGTGCTGCTGCGTTGAAATTTAGCTATACTGAGAATTTCTGGAGTATTTCTTTAGGAATTTACCAGctcatctgaggtaaatgttgaccttactgacatttttaattgtttccaGTCACTCTGCCTTTACACTGTccatataaaaacacatgaattATTACTAATGGttttggtaataataataatagctgccCTTGTGTGGCCTTTAAAATGGTGCCTATCCCCAGTTAGCAATATTTTGAAGCGTATacaataatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatatgtaaaagATAAGGCAAAAAAGGGAAGAACCATGAAATGATGGAAAGTCTGTTACGTGCTAACGGCAATAACAATGCATAAATAGAGGccttgttgtcatggttacattctATATCTCGTGTATGAATCTGCTTTAGAGAATTCCAGTAGCAGAAAATAACATACATATGTCAACCCATCAGAAACAAGTATTTTATGTGGTCGTGATATTATATACGTGGTATACTGTATAACTGATTGGCAGCTCATTCCTACTCGTGTGTGAGGATGTGCCTTTACTTAGATTTACTCTTGATCCCGCGTACACACAAACCCTTAGCGGTAGAAAAGTGTAATCAAGGAAAAATTAATTGTTCATCAGTCATGTCAGCATCATTGCTGACTTCGGTGCTCAGAACAAGGGTTTGCGCATACTCATGGCCAGGAGTAATTCACACTATACACACGTCCTCAATCAAAAAGAATAACTTgataaatgacattattattaaatgatgtAGAAAAAGGTCAAAAGGTCACAAAGTTTACGCACAAACCGATGTGTACGCACGGTTGAAAACTGAGACCCCTGAGGTCCTTTGGCCTGTTGAGCTTCACATTACACACTGAAAGGAATCacgggacaaaaaaaaaccctgttgcTCTCAGAGTgaggattttaattttgatttatcGAGTATTTGTTAACTGAGGTTTTGCTCTGAGTTCATTGTGGTTTTAAACTTAAATGCTTGAATAAAGGTCAACTTTGTATttga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU356705 False 178 lncRNA 0.31 1 2723404 2723581
XM_026935358.2 True 3051 mRNA 0.45 3 2715662 2723458

Neighbor

gene id symbol gene type direction distance location
atxn7l2a atxn7l2,LOC106565127 coding upstream 1511 2704703 ~ 2714151 (+)
sypl2a sypl2 coding upstream 18695 2684049 ~ 2696967 (+)
zgc:172270 LOC108281023 coding upstream 74339 2635314 ~ 2641323 (+)
si:ch211-213o11.11 LOC108281028 coding upstream 85941 2621512 ~ 2629721 (+)
grm2b LOC108281021,LOC108435310,LOC107575639,LOC107659540,LOC107715788 coding upstream 107727 2578374 ~ 2607935 (+)
ldlrad2 ldlrad2 coding downstream 31195 2754776 ~ 2761167 (+)
chchd4a chchd4,LOC107574929,LOC107718204,LOC102783083 coding downstream 40081 2763662 ~ 2766405 (+)
dnah1 dnah1 coding downstream 63304 2786885 ~ 2827062 (+)
mapkapk3 mapkapk3,LOC102305022,LOC101473327,LOC102199310,LOC102784126,LOC103365890 coding downstream 104307 2827888 ~ 2852258 (+)
pfkfb4a pfkfb4,LOC108254777,LOC108435436,LOC107715804,LOC107574463,LOC107551799,LOC107718206,LOC107677511 coding downstream 121793 2845374 ~ 2881640 (+)
G300827 NA non-coding upstream 39292 2674367 ~ 2676370 (+)
G300723 NA non-coding upstream 197457 2436366 ~ 2518205 (+)
LOC113539650 NA non-coding upstream 328561 2375972 ~ 2387101 (+)
G300700 NA non-coding upstream 329441 2385983 ~ 2386221 (+)
G300689 NA non-coding upstream 360417 2355033 ~ 2355245 (+)
G300837 NA non-coding downstream 1407 2724988 ~ 2725736 (+)
G300839 zbtb40 non-coding downstream 2683 2726264 ~ 2726592 (+)
G300840 NA non-coding downstream 3723 2727304 ~ 2727511 (+)
G300841 zbtb40,LOC107659551,LOC107575478,LOC107582425 non-coding downstream 4903 2728484 ~ 2729607 (+)
G300842 zbtb40 non-coding downstream 11455 2735036 ~ 2736007 (+)
camkvb camkv,LOC108414427,LOC107718199,LOC107685970,LOC107715795,LOC107659532,LOC107576418 other upstream 526745 2141522 ~ 2188917 (+)
mon1a mon1a other upstream 655021 2053083 ~ 2060641 (+)
LOC117599925 NA other upstream 1216490 1496860 ~ 1499172 (+)
erc2 erc2,LOC107582387,LOC108414413,LOC107694874,LOC107699320 other upstream 1221017 1448442 ~ 1494645 (+)
fbxo42 fbxo42,LOC107719051,LOC107656898 other upstream 1842906 863258 ~ 872756 (+)
LOC113539463 adamts9 other downstream 1126980 3850561 ~ 3913086 (+)
cadpsa cadps other downstream 1434651 4158232 ~ 4278673 (+)
LOC113539599 tmem110,mustn1,LOC108435844,LOC107746891,LOC107656046,LOC107755187,LOC103359875,LOC107091502 other downstream 1727459 4451040 ~ 4469196 (+)
ptprga ptprg,LOC107752167,LOC106583020 other downstream 2487063 5210644 ~ 5471561 (+)
LOC113539422 rusd4,LOC108255275,LOC106582904,LOC106565791,LOC108435115 other downstream 3476865 6200446 ~ 6293749 (+)

Expression


Co-expression Network