G300841 (zbtb40,LOC107659551,LOC107575478,LOC107582425)


Basic Information

Item Value
gene id G300841
gene name zbtb40,LOC107659551,LOC107575478,LOC107582425
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 2728484 ~ 2729607 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU356710
CTGAGTGTTTCTTCTTGGTGTGGTAGGACAGCGCGGCGGCCACGGCGAAGCTCATGTCACAGTGCTTGCAGCGGTACGGTTTCTCCCCCGTGTGCAGCCGCATGTGGTTCTTCAGGGACGAGTTGGCGGCGAACTTGGCGCCGCATTCCTCACACGCGTACGGCCTTTCCTCCAAATGCTCAGTGCGTCTGTGGTACAACAGACCTGaaatgtttttccacAGATCTCACACGACACTGGCTCTACTTTCTTCCTCTTAACCGGAGGGCCGTTGTGAGTCTCGGCTCGGTGCTGCTGCAGGGCTGTGACTGACGGGAACACGGCGGAGCACTCGGCGCAGCGCTGCACTCTGTCCGGACAGAACGCACACTGCTTCTTGTGCTTTAGCAGACGACACTTGAAGTCGAAGGTCTTGTTGCACCACTGGCAGCTGTAGGACACGACGACACCCTTcctcctcctgtgtgtgtgatcttcatccttctcctcttcctccccctCTTTCTCTGAGCCTGCCGTCTCCTCATTGTTTTCC

Function

symbol description
zbtb40 Predicted to enable metal ion binding activity. Orthologous to human ZBTB40 (zinc finger and BTB domain containing 40).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU356710 True 535 lncRNA 0.57 2 2728484 2729607

Neighbor

gene id symbol gene type direction distance location
atxn7l2a atxn7l2,LOC106565127 coding upstream 14333 2704703 ~ 2714151 (+)
sypl2a sypl2 coding upstream 31517 2684049 ~ 2696967 (+)
zgc:172270 LOC108281023 coding upstream 87161 2635314 ~ 2641323 (+)
si:ch211-213o11.11 LOC108281028 coding upstream 98763 2621512 ~ 2629721 (+)
grm2b LOC108281021,LOC108435310,LOC107575639,LOC107659540,LOC107715788 coding upstream 120549 2578374 ~ 2607935 (+)
ldlrad2 ldlrad2 coding downstream 25169 2754776 ~ 2761167 (+)
chchd4a chchd4,LOC107574929,LOC107718204,LOC102783083 coding downstream 34055 2763662 ~ 2766405 (+)
dnah1 dnah1 coding downstream 57278 2786885 ~ 2827062 (+)
mapkapk3 mapkapk3,LOC102305022,LOC101473327,LOC102199310,LOC102784126,LOC103365890 coding downstream 98281 2827888 ~ 2852258 (+)
pfkfb4a pfkfb4,LOC108254777,LOC108435436,LOC107715804,LOC107574463,LOC107551799,LOC107718206,LOC107677511 coding downstream 115767 2845374 ~ 2881640 (+)
G300840 NA non-coding upstream 973 2727304 ~ 2727511 (+)
G300839 zbtb40 non-coding upstream 1892 2726264 ~ 2726592 (+)
G300837 NA non-coding upstream 2748 2724988 ~ 2725736 (+)
G300838 NA non-coding upstream 11402 2716700 ~ 2717082 (+)
G300827 NA non-coding upstream 52114 2674367 ~ 2676370 (+)
G300842 zbtb40 non-coding downstream 5429 2735036 ~ 2736007 (+)
G300843 NA non-coding downstream 6871 2736478 ~ 2736908 (+)
G300775 rab7a,LOC103385930,LOC101061812,LOC107385713,LOC107385419,LOC106582926,LOC108254780 non-coding downstream 177101 2906708 ~ 2908054 (+)
LOC113539486 NA non-coding downstream 299333 3028940 ~ 3060846 (+)
G301487 NA non-coding downstream 723064 3452671 ~ 3453505 (+)
LOC113539549 LOC108254930 other upstream 4903 2715662 ~ 2723581 (+)
camkvb camkv,LOC108414427,LOC107718199,LOC107685970,LOC107715795,LOC107659532,LOC107576418 other upstream 539567 2141522 ~ 2188917 (+)
mon1a mon1a other upstream 667843 2053083 ~ 2060641 (+)
LOC117599925 NA other upstream 1229312 1496860 ~ 1499172 (+)
erc2 erc2,LOC107582387,LOC108414413,LOC107694874,LOC107699320 other upstream 1233839 1448442 ~ 1494645 (+)
LOC113539463 adamts9 other downstream 1120954 3850561 ~ 3913086 (+)
cadpsa cadps other downstream 1428625 4158232 ~ 4278673 (+)
LOC113539599 tmem110,mustn1,LOC108435844,LOC107746891,LOC107656046,LOC107755187,LOC103359875,LOC107091502 other downstream 1721433 4451040 ~ 4469196 (+)
ptprga ptprg,LOC107752167,LOC106583020 other downstream 2481037 5210644 ~ 5471561 (+)
LOC113539422 rusd4,LOC108255275,LOC106582904,LOC106565791,LOC108435115 other downstream 3470839 6200446 ~ 6293749 (+)

Expression


Co-expression Network