G300842 (zbtb40)


Basic Information

Item Value
gene id G300842
gene name zbtb40
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 2735036 ~ 2736007 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU356712
ttcacactttagCGTAACCAaaccacctaccagcatgttttagatggtgggaggaaactggagaacccagaggaaacccatgcagacacagggagaacatgcaaaagagtaacctgagctcaaacctggaaccctggagctgtgaggcagcaacatcACCCATGGCACCACCATGCTGCTacagtttaaacagttaaagtataataaaaatgaataaataaataaaaatcaccatTTTTTGACTCCAGTCTGTTTCTTGGACTCTTCGTATTGTCCCCACGTGCCTGTAACGCAAACTCTTGTCCAGAAGCATCAAGTTGTCTTGGCTCTTCTCTTTCACACAAAGGAACATCCCCGTGATTTTTTAAACCCTGAGCATCTTCAGACTGTTTCACAAGCTCGTCCAGGATGTTCTTACAGCCGACAGCCACGTCAAACATCTGCAGGCTGTCTGCGGTGGCGATGACACGCGTGAAGTCGTGTTTGCCCGGCAGCAGTCTGCCCGAGTAGGCCATGTCCAGCAGAGAGGAGAACTCCTGCGCCGTGACCACCGCCGTGTCGATGGAGATGCTGTCTGAAGTCTCGAGGAGAGACTTAAAGAGCAGGCTGGAGGCGGCAAGGACCACTTTGTGCGCCGGATGAGCCACGTCCCCCACCAGGATGGTGCAGTCACAGAACTGGGACTCTTTTCGCAAAGTCTGCAGCTGCTGCATGAGCTGTCGGCTGTAGTTCGGGAGCTCCATGATACACCTGTGCaggtgagaaagtgagagtgggtacatcatttttaaaattggatTTGGGGTTGGATACAggacagcatgtttttttttcatgggtAGAAAACTGTACTATTACTTGTTACTGGAGTGGGTGGTacttatattataattatatactgtaaaatCATCTCAATCTTAGATTTCATTCTTCTATTTTTTAAGGTTGTATTGCTGTTCAgcttattaaaaa

Function

symbol description
zbtb40 Predicted to enable metal ion binding activity. Orthologous to human ZBTB40 (zinc finger and BTB domain containing 40).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU356712 True 972 lncRNA 0.47 1 2735036 2736007

Neighbor

gene id symbol gene type direction distance location
atxn7l2a atxn7l2,LOC106565127 coding upstream 20885 2704703 ~ 2714151 (+)
sypl2a sypl2 coding upstream 38069 2684049 ~ 2696967 (+)
zgc:172270 LOC108281023 coding upstream 93713 2635314 ~ 2641323 (+)
si:ch211-213o11.11 LOC108281028 coding upstream 105315 2621512 ~ 2629721 (+)
grm2b LOC108281021,LOC108435310,LOC107575639,LOC107659540,LOC107715788 coding upstream 127101 2578374 ~ 2607935 (+)
ldlrad2 ldlrad2 coding downstream 18769 2754776 ~ 2761167 (+)
chchd4a chchd4,LOC107574929,LOC107718204,LOC102783083 coding downstream 27655 2763662 ~ 2766405 (+)
dnah1 dnah1 coding downstream 50878 2786885 ~ 2827062 (+)
mapkapk3 mapkapk3,LOC102305022,LOC101473327,LOC102199310,LOC102784126,LOC103365890 coding downstream 91881 2827888 ~ 2852258 (+)
pfkfb4a pfkfb4,LOC108254777,LOC108435436,LOC107715804,LOC107574463,LOC107551799,LOC107718206,LOC107677511 coding downstream 109367 2845374 ~ 2881640 (+)
G300841 zbtb40,LOC107659551,LOC107575478,LOC107582425 non-coding upstream 5429 2728484 ~ 2729607 (+)
G300840 NA non-coding upstream 7525 2727304 ~ 2727511 (+)
G300839 zbtb40 non-coding upstream 8444 2726264 ~ 2726592 (+)
G300837 NA non-coding upstream 9300 2724988 ~ 2725736 (+)
G300838 NA non-coding upstream 17954 2716700 ~ 2717082 (+)
G300843 NA non-coding downstream 471 2736478 ~ 2736908 (+)
G300775 rab7a,LOC103385930,LOC101061812,LOC107385713,LOC107385419,LOC106582926,LOC108254780 non-coding downstream 170701 2906708 ~ 2908054 (+)
LOC113539486 NA non-coding downstream 292933 3028940 ~ 3060846 (+)
G301487 NA non-coding downstream 716664 3452671 ~ 3453505 (+)
G301506 NA non-coding downstream 785785 3521792 ~ 3530359 (+)
LOC113539549 LOC108254930 other upstream 11455 2715662 ~ 2723581 (+)
camkvb camkv,LOC108414427,LOC107718199,LOC107685970,LOC107715795,LOC107659532,LOC107576418 other upstream 546119 2141522 ~ 2188917 (+)
mon1a mon1a other upstream 674395 2053083 ~ 2060641 (+)
LOC117599925 NA other upstream 1235864 1496860 ~ 1499172 (+)
erc2 erc2,LOC107582387,LOC108414413,LOC107694874,LOC107699320 other upstream 1240391 1448442 ~ 1494645 (+)
LOC113539463 adamts9 other downstream 1114554 3850561 ~ 3913086 (+)
cadpsa cadps other downstream 1422225 4158232 ~ 4278673 (+)
LOC113539599 tmem110,mustn1,LOC108435844,LOC107746891,LOC107656046,LOC107755187,LOC103359875,LOC107091502 other downstream 1715033 4451040 ~ 4469196 (+)
ptprga ptprg,LOC107752167,LOC106583020 other downstream 2474637 5210644 ~ 5471561 (+)
LOC113539422 rusd4,LOC108255275,LOC106582904,LOC106565791,LOC108435115 other downstream 3464439 6200446 ~ 6293749 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location