G300843


Basic Information

Item Value
gene id G300843
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 2736478 ~ 2736908 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU356713
ACAGGTTTCATTCTCAAACTGGttaatgagcagataaaagctCAGAAAATATCATTTACCTTTCAGGACATGGAATAATATAGCTCCATGCACTGAATAACTGTTAATTAATGAAGTTAATGAGGCTTAATTTGAAGAGAGAAGGGGCGCACAGAGCCTGTAATGTTCCTTCATGAACCGGTTTCCATAATACTGTCTCTAACTCATTCACCATGACTAGCTGCTCACTAGGCTAGCTAATTTAGCAAACCAGCAATGAGTGTTAACGGTTGCTAAAAAACAAGCTAAAGTGCtatacacattatttaaagtctttttttttttttctttctttctttttttttttttttaaacacagcacTGTACACCTAACGACCATTCTAA
>TU356715
ACAGGTTTCATTCTCAAACTGGttaatgagcagataaaagctCAGAAAATATCATTTACCTTTCAGGACATGGAATAATATAGCTCCATGCACTGAATAACTGTTAATTAATGAAGTTAATGAGGCTTAATTTGAAGAGAGAAGGGGCGCACAGAGCCTGTAATGTTCCTTCATGAACCGGTTTCCATAATACTGTCTCTAACTCATTCACCATGACTAGCTGCTCACTAGGCTAGCTAATTTAGCAAACCAGCAATGAGTGTTAACGGTTGCTAAAAAACAAGCTAAAGTGCtatacacattatttaaagtctttttttttttttctttctttctttttttttttttttaaacacagcacTGTACACCTAACGACCATTCTAACTTCCTCATTACCTTCAGTGTTATTCAAATAATCCGGGTCTTTATTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU356713 False 384 lncRNA 0.35 1 2736478 2736861
TU356715 True 431 lncRNA 0.35 1 2736478 2736908

Neighbor

gene id symbol gene type direction distance location
atxn7l2a atxn7l2,LOC106565127 coding upstream 22327 2704703 ~ 2714151 (+)
sypl2a sypl2 coding upstream 39511 2684049 ~ 2696967 (+)
zgc:172270 LOC108281023 coding upstream 95155 2635314 ~ 2641323 (+)
si:ch211-213o11.11 LOC108281028 coding upstream 106757 2621512 ~ 2629721 (+)
grm2b LOC108281021,LOC108435310,LOC107575639,LOC107659540,LOC107715788 coding upstream 128543 2578374 ~ 2607935 (+)
ldlrad2 ldlrad2 coding downstream 17868 2754776 ~ 2761167 (+)
chchd4a chchd4,LOC107574929,LOC107718204,LOC102783083 coding downstream 26754 2763662 ~ 2766405 (+)
dnah1 dnah1 coding downstream 49977 2786885 ~ 2827062 (+)
mapkapk3 mapkapk3,LOC102305022,LOC101473327,LOC102199310,LOC102784126,LOC103365890 coding downstream 90980 2827888 ~ 2852258 (+)
pfkfb4a pfkfb4,LOC108254777,LOC108435436,LOC107715804,LOC107574463,LOC107551799,LOC107718206,LOC107677511 coding downstream 108466 2845374 ~ 2881640 (+)
G300842 zbtb40 non-coding upstream 471 2735036 ~ 2736007 (+)
G300841 zbtb40,LOC107659551,LOC107575478,LOC107582425 non-coding upstream 6871 2728484 ~ 2729607 (+)
G300840 NA non-coding upstream 8967 2727304 ~ 2727511 (+)
G300839 zbtb40 non-coding upstream 9886 2726264 ~ 2726592 (+)
G300837 NA non-coding upstream 10742 2724988 ~ 2725736 (+)
G300775 rab7a,LOC103385930,LOC101061812,LOC107385713,LOC107385419,LOC106582926,LOC108254780 non-coding downstream 169800 2906708 ~ 2908054 (+)
LOC113539486 NA non-coding downstream 292032 3028940 ~ 3060846 (+)
G301487 NA non-coding downstream 715763 3452671 ~ 3453505 (+)
G301506 NA non-coding downstream 784884 3521792 ~ 3530359 (+)
G301792 NA non-coding downstream 1181422 3918330 ~ 3918531 (+)
LOC113539549 LOC108254930 other upstream 12897 2715662 ~ 2723581 (+)
camkvb camkv,LOC108414427,LOC107718199,LOC107685970,LOC107715795,LOC107659532,LOC107576418 other upstream 547561 2141522 ~ 2188917 (+)
mon1a mon1a other upstream 675837 2053083 ~ 2060641 (+)
LOC117599925 NA other upstream 1237306 1496860 ~ 1499172 (+)
erc2 erc2,LOC107582387,LOC108414413,LOC107694874,LOC107699320 other upstream 1241833 1448442 ~ 1494645 (+)
LOC113539463 adamts9 other downstream 1113653 3850561 ~ 3913086 (+)
cadpsa cadps other downstream 1421324 4158232 ~ 4278673 (+)
LOC113539599 tmem110,mustn1,LOC108435844,LOC107746891,LOC107656046,LOC107755187,LOC103359875,LOC107091502 other downstream 1714132 4451040 ~ 4469196 (+)
ptprga ptprg,LOC107752167,LOC106583020 other downstream 2473736 5210644 ~ 5471561 (+)
LOC113539422 rusd4,LOC108255275,LOC106582904,LOC106565791,LOC108435115 other downstream 3463538 6200446 ~ 6293749 (+)

Expression


Co-expression Network