G301792


Basic Information

Item Value
gene id G301792
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 3918330 ~ 3918531 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU357807
GTTAGATTTATCAAGCGAATatttctgtatgttgattgatctaaagcaaatacttgtatatacagtataactcctttaaaggtaagaagtgctgcgttgtttactgctgatgctgtgagcagccatgttgatttgatgtcacttgctgaactcagagttgAGGCGACTGTCCCGAGTTCCTGAgcaggaattccgagttgag

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU357807 True 202 lncRNA 0.41 1 3918330 3918531

Neighbor

gene id symbol gene type direction distance location
LOC117599926 magi1 coding upstream 112203 3801729 ~ 3806127 (+)
magi1b magi1,magi1b,LOC107728617 coding upstream 115997 3623893 ~ 3802333 (+)
lrig1 lrig1 coding upstream 358683 3519749 ~ 3559647 (+)
suclg2 suclg2,LOC107729402,LOC107753779,LOC107699794 coding upstream 532916 3288732 ~ 3385414 (+)
tafa4b fam19a4,fam19a2,LOC107655986,LOC107558879,LOC104966247,LOC108231490 coding upstream 904638 2965364 ~ 3013692 (+)
psmd6 psmd6 coding downstream 119241 4037772 ~ 4042092 (+)
thoc7 thoc7,LOC107696849,LOC107739288,LOC107551027,LOC107728626 coding downstream 161905 4080436 ~ 4085015 (+)
fezf2 fezf2 coding downstream 371041 4289572 ~ 4292368 (+)
fgd5a LOC108255103,LOC108435806 coding downstream 415634 4334165 ~ 4380659 (+)
prkcdb prkcd,LOC108254977,LOC108435819,LOC107656045,LOC107600299,LOC107696837 coding downstream 471821 4390352 ~ 4418766 (+)
G301506 NA non-coding upstream 387971 3521792 ~ 3530359 (+)
G301487 NA non-coding upstream 464825 3452671 ~ 3453505 (+)
LOC113539486 NA non-coding upstream 857484 3028940 ~ 3060846 (+)
G300775 rab7a,LOC103385930,LOC101061812,LOC107385713,LOC107385419,LOC106582926,LOC108254780 non-coding upstream 1010276 2906708 ~ 2908054 (+)
G300843 NA non-coding upstream 1181422 2736478 ~ 2736908 (+)
G301805 NA non-coding downstream 14576 3933107 ~ 3933350 (+)
G301852 NA non-coding downstream 110478 4029009 ~ 4029270 (+)
G301857 NA non-coding downstream 124559 4043090 ~ 4043866 (+)
G301881 NA non-coding downstream 213749 4132280 ~ 4210261 (+)
G301885 namptb,LOC108255025,LOC108435731,LOC105912295,LOC107728616,LOC107590159 non-coding downstream 220251 4138782 ~ 4168646 (+)
LOC113539463 adamts9 other upstream 5244 3850561 ~ 3913086 (+)
LOC113539549 LOC108254930 other upstream 1194749 2715662 ~ 2723581 (+)
camkvb camkv,LOC108414427,LOC107718199,LOC107685970,LOC107715795,LOC107659532,LOC107576418 other upstream 1729413 2141522 ~ 2188917 (+)
mon1a mon1a other upstream 1857689 2053083 ~ 2060641 (+)
LOC117599925 NA other upstream 2419158 1496860 ~ 1499172 (+)
cadpsa cadps other downstream 239701 4158232 ~ 4278673 (+)
LOC113539599 tmem110,mustn1,LOC108435844,LOC107746891,LOC107656046,LOC107755187,LOC103359875,LOC107091502 other downstream 532509 4451040 ~ 4469196 (+)
ptprga ptprg,LOC107752167,LOC106583020 other downstream 1292113 5210644 ~ 5471561 (+)
LOC113539422 rusd4,LOC108255275,LOC106582904,LOC106565791,LOC108435115 other downstream 2281915 6200446 ~ 6293749 (+)
tmem167b tmem167b,LOC107592590,LOC107555997 other downstream 2579529 6498060 ~ 6502636 (+)

Expression


Co-expression Network