G301805


Basic Information

Item Value
gene id G301805
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 3933107 ~ 3933350 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU357820
gaaaaagttaatgctggctatgatagaaaggtgtcagaacgcACAGTGTATCGCAGTTTGCTGCATATGGCGTTGCATAGCCGCAGATCAGTCAGagcgcccatgctgaccctgtccaccgccgaaagctcctacaatgggcacgtgagcatcagaactggaccatggagcaatggaagaaggtggcctggtctgataaatcacgttttcctttacatcatgtggacggccaggtgcgtgtgcg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU357820 True 244 lncRNA 0.52 1 3933107 3933350

Neighbor

gene id symbol gene type direction distance location
LOC117599926 magi1 coding upstream 126980 3801729 ~ 3806127 (+)
magi1b magi1,magi1b,LOC107728617 coding upstream 130774 3623893 ~ 3802333 (+)
lrig1 lrig1 coding upstream 373460 3519749 ~ 3559647 (+)
suclg2 suclg2,LOC107729402,LOC107753779,LOC107699794 coding upstream 547693 3288732 ~ 3385414 (+)
tafa4b fam19a4,fam19a2,LOC107655986,LOC107558879,LOC104966247,LOC108231490 coding upstream 919415 2965364 ~ 3013692 (+)
psmd6 psmd6 coding downstream 104422 4037772 ~ 4042092 (+)
thoc7 thoc7,LOC107696849,LOC107739288,LOC107551027,LOC107728626 coding downstream 147086 4080436 ~ 4085015 (+)
fezf2 fezf2 coding downstream 356222 4289572 ~ 4292368 (+)
fgd5a LOC108255103,LOC108435806 coding downstream 400815 4334165 ~ 4380659 (+)
prkcdb prkcd,LOC108254977,LOC108435819,LOC107656045,LOC107600299,LOC107696837 coding downstream 457002 4390352 ~ 4418766 (+)
G301792 NA non-coding upstream 14576 3918330 ~ 3918531 (+)
G301506 NA non-coding upstream 402748 3521792 ~ 3530359 (+)
G301487 NA non-coding upstream 479602 3452671 ~ 3453505 (+)
LOC113539486 NA non-coding upstream 872261 3028940 ~ 3060846 (+)
G300775 rab7a,LOC103385930,LOC101061812,LOC107385713,LOC107385419,LOC106582926,LOC108254780 non-coding upstream 1025053 2906708 ~ 2908054 (+)
G301852 NA non-coding downstream 95659 4029009 ~ 4029270 (+)
G301857 NA non-coding downstream 109740 4043090 ~ 4043866 (+)
G301881 NA non-coding downstream 198930 4132280 ~ 4210261 (+)
G301885 namptb,LOC108255025,LOC108435731,LOC105912295,LOC107728616,LOC107590159 non-coding downstream 205432 4138782 ~ 4168646 (+)
LOC117599910 NA non-coding downstream 217192 4150542 ~ 4156726 (+)
LOC113539463 adamts9 other upstream 20021 3850561 ~ 3913086 (+)
LOC113539549 LOC108254930 other upstream 1209526 2715662 ~ 2723581 (+)
camkvb camkv,LOC108414427,LOC107718199,LOC107685970,LOC107715795,LOC107659532,LOC107576418 other upstream 1744190 2141522 ~ 2188917 (+)
mon1a mon1a other upstream 1872466 2053083 ~ 2060641 (+)
LOC117599925 NA other upstream 2433935 1496860 ~ 1499172 (+)
cadpsa cadps other downstream 224882 4158232 ~ 4278673 (+)
LOC113539599 tmem110,mustn1,LOC108435844,LOC107746891,LOC107656046,LOC107755187,LOC103359875,LOC107091502 other downstream 517690 4451040 ~ 4469196 (+)
ptprga ptprg,LOC107752167,LOC106583020 other downstream 1277294 5210644 ~ 5471561 (+)
LOC113539422 rusd4,LOC108255275,LOC106582904,LOC106565791,LOC108435115 other downstream 2267096 6200446 ~ 6293749 (+)
tmem167b tmem167b,LOC107592590,LOC107555997 other downstream 2564710 6498060 ~ 6502636 (+)

Expression


Co-expression Network