G301857


Basic Information

Item Value
gene id G301857
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 4043090 ~ 4043866 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU357872
AGTTGGCCACTCGTGTAAtctactttacacacacatcaaaggAAAGATAACGAGGGCGTGTTTTAAACCGTATTGAAACTGCGGGACGTGATTTGTACCGATCTTCCCTCGGATGTATCTCATGACGCAGTGAAAGGACAAGAGGATCACATAATGGACaggtttaaacaaaaataataaaaaaggagaagaagctTCTACAAAACCATTTATATAACACTTGTGTAACGTGGAACAAAAATTACTGCTGAAACAGGTGAGAAACAAATTCAGGCACTTTTCTGCTtcgttattatttaaaaagctgCAAAAGAACGACTGCAGTGTTTCGAAATACAAATAAGTTTGGCAACGGTGGTGCATTAAGTGTTCACACTCCTTCTCTTGTTATTAAATTGCTTTTTCGGCAGCCCCCGGGATCCTTAAAACATGAACAACTAGTGAAATGTGACTGGTGAAATCTGGTGTTTGGGGCCATTTTAGTGACATCCTCTTAAGTAGTTTGACTTAGCAGAAAGAGGgagataaaaattaaataataataataataataataataaaagattctCTCCACTATGGTGGCAACACTCCTTCATACGGATTTCAGTCCACAACTATTAATAAGAAGCTCCGTCTCGTGAGTAAGAGGCATATTGCATTATTGGCTTGGCAGTGAACCACTTCAAATCTTAAAACGGATCCgttcactaaataaataataacgaTCTCAACTGTACCAAAAACGTGTAAGAAAATGCCTGTGCAAAAATACATCTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU357872 True 777 lncRNA 0.37 1 4043090 4043866

Neighbor

gene id symbol gene type direction distance location
psmd6 psmd6 coding upstream 998 4037772 ~ 4042092 (+)
prickle2b prickle2,LOC107590162,LOC107739290,LOC107728631,LOC107656034,LOC107551119 coding upstream 31322 3915586 ~ 4011768 (+)
LOC117599926 magi1 coding upstream 236963 3801729 ~ 3806127 (+)
magi1b magi1,magi1b,LOC107728617 coding upstream 240757 3623893 ~ 3802333 (+)
lrig1 lrig1 coding upstream 483443 3519749 ~ 3559647 (+)
thoc7 thoc7,LOC107696849,LOC107739288,LOC107551027,LOC107728626 coding downstream 36570 4080436 ~ 4085015 (+)
fezf2 fezf2 coding downstream 245706 4289572 ~ 4292368 (+)
fgd5a LOC108255103,LOC108435806 coding downstream 290299 4334165 ~ 4380659 (+)
prkcdb prkcd,LOC108254977,LOC108435819,LOC107656045,LOC107600299,LOC107696837 coding downstream 346486 4390352 ~ 4418766 (+)
sfmbt1 sfmbt1 coding downstream 388659 4432525 ~ 4449377 (+)
G301852 NA non-coding upstream 13820 4029009 ~ 4029270 (+)
G301805 NA non-coding upstream 109740 3933107 ~ 3933350 (+)
G301792 NA non-coding upstream 124559 3918330 ~ 3918531 (+)
G301506 NA non-coding upstream 512731 3521792 ~ 3530359 (+)
G301487 NA non-coding upstream 589585 3452671 ~ 3453505 (+)
G301881 NA non-coding downstream 88414 4132280 ~ 4210261 (+)
G301885 namptb,LOC108255025,LOC108435731,LOC105912295,LOC107728616,LOC107590159 non-coding downstream 94916 4138782 ~ 4168646 (+)
LOC117599910 NA non-coding downstream 106676 4150542 ~ 4156726 (+)
G301921 NA non-coding downstream 250601 4294467 ~ 4294733 (+)
G301923 NA non-coding downstream 251442 4295308 ~ 4295516 (+)
LOC113539463 adamts9 other upstream 130004 3850561 ~ 3913086 (+)
LOC113539549 LOC108254930 other upstream 1319509 2715662 ~ 2723581 (+)
camkvb camkv,LOC108414427,LOC107718199,LOC107685970,LOC107715795,LOC107659532,LOC107576418 other upstream 1854173 2141522 ~ 2188917 (+)
mon1a mon1a other upstream 1982449 2053083 ~ 2060641 (+)
LOC117599925 NA other upstream 2543918 1496860 ~ 1499172 (+)
cadpsa cadps other downstream 114366 4158232 ~ 4278673 (+)
LOC113539599 tmem110,mustn1,LOC108435844,LOC107746891,LOC107656046,LOC107755187,LOC103359875,LOC107091502 other downstream 407174 4451040 ~ 4469196 (+)
ptprga ptprg,LOC107752167,LOC106583020 other downstream 1166778 5210644 ~ 5471561 (+)
LOC113539422 rusd4,LOC108255275,LOC106582904,LOC106565791,LOC108435115 other downstream 2156580 6200446 ~ 6293749 (+)
tmem167b tmem167b,LOC107592590,LOC107555997 other downstream 2454194 6498060 ~ 6502636 (+)

Expression


Co-expression Network