G301923


Basic Information

Item Value
gene id G301923
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 4295308 ~ 4295516 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU357951
ggccAACTCAATCGATTGTAAATGGGAGATTAACGGGGGTAGTGTCGGCGCGTTTCTGCTAAGAGGCGACGAAGAAAAGGTCCCAATTAAGTCCACCAAATGTTAACTACGtcccttttctcttcctctctcccgCTGCCCGCGCATTTAGACCAAATGAAATTCTAATTAAACCGCATTAAAGCGTCCTCCTCAgtccaggctttttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU357951 True 209 lncRNA 0.47 1 4295308 4295516

Neighbor

gene id symbol gene type direction distance location
fezf2 fezf2 coding upstream 2940 4289572 ~ 4292368 (+)
thoc7 thoc7,LOC107696849,LOC107739288,LOC107551027,LOC107728626 coding upstream 210293 4080436 ~ 4085015 (+)
psmd6 psmd6 coding upstream 253216 4037772 ~ 4042092 (+)
prickle2b prickle2,LOC107590162,LOC107739290,LOC107728631,LOC107656034,LOC107551119 coding upstream 283540 3915586 ~ 4011768 (+)
LOC117599926 magi1 coding upstream 489181 3801729 ~ 3806127 (+)
fgd5a LOC108255103,LOC108435806 coding downstream 38649 4334165 ~ 4380659 (+)
prkcdb prkcd,LOC108254977,LOC108435819,LOC107656045,LOC107600299,LOC107696837 coding downstream 94836 4390352 ~ 4418766 (+)
sfmbt1 sfmbt1 coding downstream 137009 4432525 ~ 4449377 (+)
gnl3 gnl3 coding downstream 371360 4666876 ~ 4673687 (+)
spcs1 spcs1 coding downstream 385514 4681030 ~ 4683551 (+)
G301921 NA non-coding upstream 575 4294467 ~ 4294733 (+)
G301881 NA non-coding upstream 85047 4132280 ~ 4210261 (+)
G301885 namptb,LOC108255025,LOC108435731,LOC105912295,LOC107728616,LOC107590159 non-coding upstream 126662 4138782 ~ 4168646 (+)
LOC117599910 NA non-coding upstream 138582 4150542 ~ 4156726 (+)
G301857 NA non-coding upstream 251442 4043090 ~ 4043866 (+)
G302281 NA non-coding downstream 436637 4732153 ~ 4733061 (+)
G302360 NA non-coding downstream 525176 4820692 ~ 4820899 (+)
LOC117599916 NA non-coding downstream 541636 4837152 ~ 4878375 (+)
G302530 NA non-coding downstream 880054 5175570 ~ 5217425 (+)
G302575 NA non-coding downstream 1227018 5522534 ~ 5565014 (+)
cadpsa cadps other upstream 16635 4158232 ~ 4278673 (+)
LOC113539463 adamts9 other upstream 382222 3850561 ~ 3913086 (+)
LOC113539549 LOC108254930 other upstream 1571727 2715662 ~ 2723581 (+)
camkvb camkv,LOC108414427,LOC107718199,LOC107685970,LOC107715795,LOC107659532,LOC107576418 other upstream 2106391 2141522 ~ 2188917 (+)
mon1a mon1a other upstream 2234667 2053083 ~ 2060641 (+)
LOC113539599 tmem110,mustn1,LOC108435844,LOC107746891,LOC107656046,LOC107755187,LOC103359875,LOC107091502 other downstream 155524 4451040 ~ 4469196 (+)
ptprga ptprg,LOC107752167,LOC106583020 other downstream 915128 5210644 ~ 5471561 (+)
LOC113539422 rusd4,LOC108255275,LOC106582904,LOC106565791,LOC108435115 other downstream 1904930 6200446 ~ 6293749 (+)
tmem167b tmem167b,LOC107592590,LOC107555997 other downstream 2202544 6498060 ~ 6502636 (+)
cpne5b LOC108436414,LOC108280970,LOC103367600 other downstream 2368452 6663968 ~ 6779358 (+)

Expression


Co-expression Network