LOC113539599 (tmem110,mustn1,LOC108435844,LOC107746891,LOC107656046,LOC107755187,LOC103359875,LOC107091502)


Basic Information

Item Value
gene id LOC113539599
gene name tmem110,mustn1,LOC108435844,LOC107746891,LOC107656046,LOC107755187,LOC103359875,LOC107091502
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 4451040 ~ 4469196 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU358141
gatagcACCAGTGAGAGGATAACACTGAGAGAAAGATATATAAAGGACACAGAGATAGGAGTGGGACAAGTAAACGGCCAGCTTGCTGCTAGTCAGGATCATACGGGCATACGACATGTCTCAGCCAGGAgaggtgaagaagaagaagcgtCCGCCTATGAAGGAGGAGGACCTGAAAGGGGCCCGCAGTAAGCTGGGCCTGAAGGGAGAAGTGAAGAGTAAAACGTATGAAGTCATGGTGGAGTGTGAACGTGTGGGCAAGACAGCTCCATCTGTGTTTAGCGGATTGCGCACTGGAACAGAGACGGCATTGGACAAACCCAAAGCTCCATCGGGGAGCGTCTTCGGCAAGTGAGGAGATCTGGAATCCATCTGCGTTAAAGTGAAAGATGGCTGGCAGCCCACTGTGGGCTAATACTTTATAAACCATTTTTAAGAAAGGCTGGTGTCTAGTTATATGATGATTGAACTGGAATTTGGAATTACACATATCTTATTTCCAAATGTTGAATtaatttttgtataatttgtacAATTTTTCTAAACAACTACATAGGTGTTTGGTTGATTCTTTTGTTCCCATTTCAAgtcttatattttatacatt
>XM_026935461.2
TACGTGGGAAAGGGGAAGTTGAGTAGGATGTCAGGGTGGACGCAGGCTGCCGTGTTAAACGTGTTTATATGTAGTTGAAGGGGGTTTGGATGAAAATAAATCCCTCTGAATGTGATGTGGAGGAGAACTACGATTCTTCTGTGGAAATGTGGATAAAACCAAACGACCAGACGACTCGGAGACTGAAGCGACCCAGGAGCTTCATCACCCGGGCTGGATGTTAAAGGCGCTTTCGCTGCTGCTGTACGcaagaaaatgacattttatacaaACTAAACTTgctagaaatataaaaaagagaaaaggctgATATTTAGTAGACATAGCCTGCTGTTTTGTTCATTGTAGGTTAGTAGCTACAAAACTAGCACACCAAGCTAGCATAAACAAGACTTAAAGAAGTCAAATACACGGTTTTaagttaaaacaaacaaacaaacaaacaaacaaaccagttTTGGTGAGGAAATTATGATTAGTTGCACATTAGCATCCTTGCTAAGTGCTACCTGGTTGCTTCATTAGGATGCTGATCCATAGCGTCCTTAGTGATGTTAGGTAGACTGGtttaaacctaaataaataaataaatatgggttatataataatatatccGCTTTACTGAGCTTTCCAGGAGAAAATGAaggatggaaaaaaacattaactaacattttacacacacactttcccctgAGAGGCCGCTCTCTTTCCGGAAGCTCTGTCATTTCTTTGAGGAGTTGAAAATATCCCGCTAAAGCTCGTAAACATGGCGAACACCGGAGTCAGCGCGATGCTGCTGTCCCGACCCGAGGAAGGAAACGCAGCCGGACACCTGGTGTCCAGAGCCGGGGAAGGAGCCGCGTCAGGGCCGCTGCTGCCCTCCAACTCCTCTCCCACGGACACGGAGATGAAGGGATGCGCTAACGGAGACCTGATGGACAGCTTCGGGATCTTCCTGCAGGGCCTGCTCGGGGTGGTAGCCTTCAGCACCCTCATGTTGAAACGCTTCAGAGAACCCAAGCACGAAAGAAGACCCTGGAGGATCTGGTTTCTTGACACTTCCAAACAGGCCATTGGGATGCTCTTCATTCACTTTGCCAATGTGTACCTGTCAGACCTCACCGAGGAGGACCCGTGTTCACTATACCTCATAAACTTTCTGTTGGATGCTACACTGGGCATGTTGGTGATTTATGGTGGTGTGAAGGCCGTCAGTGCCGTGGTCGAGTGGAGGCAGTGGGACTCGCTGCGCTTCGGAGAGTATggggagcCAGTACAATGCACTGCCTGGGCAGGCCAGTGTGCGCTATACATCCTAATTATGATGTTTGAGAAGGTGGTCATCATCCTGGTGCTTCTAATCCCTCAGTGGAAGAAGCTGGCTATGCTGAACCCCATCACAAACCCACAGCTGGAGCTGGCTCTCGTTATGCTAATCGTGCCGTTCTTCGTTAATGCACTGATGTTCTGGGTCGTCGATAACTTCCTGATGAAGAAAGGCAGGACAAAAGCCAagctggaggagagagaggtTGGGGACGATTCACGAGGTAGCAGCAAGGTGCGCTACAGACGAGCGCTCTCTCACGACGACTCCGAATCAGAgaaggagtctccagtgttaatCTGTGgaacagttattaaaaaaatgtttctcaaCATGGGGAAAGTCTTAAGGACGGAGgactttctctgtaacaagctgcatttttgctgTGACTTCATGAGAATGTAGGTAAGCAGACGACtgttttattgctgttataaaGCAAGTGAAATGgacatggacgttccacaacattaaacgtaactgtaaatagattaaaaaaatatgatgtgttgttttttaataaataaaaaaatgttagtgttggcaaattgccgtggaaagaaaaataaaacactacaggacatGTTGTTAAACCAAGGTTTACAAATTCACCAGGAAATGAATCGCCCATAATCCCGCCTCGCCACAGCAAGGCAATAAAATTGCTACAACTAAACCATAGACGTTGGTCATGGACTAAAAGTTACGAGTTTGCACCAGTTATATAATATGGTAGTAATATACAGCTATAACTATCTAAATATGAAAGTGAATGAAAGTCTTCATGGtatgcggttataggaaaagtAACTCAACTTCATGACAGGCCACGCCACACCACTGTAGTGTTTGATtgatttcctaaaacagcacacgcctaaattgttttattctttacatattaaTCACAACTTCATTGCATTTCATCAGtgtgtcattttaaataatgaacaattCATGATGAATAAAACCAAAACTAGTCCTaagacatatttttttttgtgtgtgtgtgtgtgtgtatgtttgttacTGAATTCTTAAAGATGTGTGTTTAAGAaagtaactgtaagttttctacCCT
>XM_026935462.2
TGataacagaaagacagagatagcACCAGTGAGAGGATAACACTGAGAGAAAGATATATAAAGGACACAGAGATAGGAGTGGGACAAGTAAACGGCCAGCTTGCTGCTAGTCAGGATCATACGGGCATACGACATGTCTCAGCCAGGAgaggtgaagaagaagaagcgtCCGCCTATGAAGGAGGAGGACCTGAAAGGGGCCCGCAGTAAGCTGGGCCTGAAGGGAGAAGTGAAGAGTAAAACGTATGAAGTCATGGTGGAGTGTGAACGTGTGGGCAAGACAGCTCCATCTGTGTTTAGCGGATTGCGCACTGGAACAGAGACGGCATTGGACAAACCCAAAGCTCCATCGGGGAGCGTCTTCGGCAAGTGAGGAGATCTGGAATCCATCTGCGTTAAAGTGAAAGATGGCTGGCAGCCCACTGTGGGCTAATACTTTATAAACCATTTTTAAGAAAGGCTGGTGTCTAGTTATATGATGATTGAACTGGAATTTGGAATTACACATATCTTATTTCCAAATGTTGAATtaatttttgtataatttgtacAATTTTTCTAAACAACTACATAGGTGTTTGGTTGATTCTTTTGTTCCCATTTCAAgtcttatattttatacattaaagcATTCTAACGACAACTTT
>XM_026935463.2
TACGTGGGAAAGGGGAAGTTGAGTAGGATGTCAGGGTGGACGCAGGCTGCCGTGTTAAACGTGTTTATATGTAGTTGAAGGGGGTTTGGATGAAAATAAATCCCTCTGAATGTGATGTGGAGGAGAACTACGATTCTTCTGTGGAAATGTGGATAAAACCAAACGACCAGACGACTCGGAGACTGAAGCGACCCAGGAGCTTCATCACCCGGGCTGGATGTTAAAGGCGCTTTCGCTGCTGCTGTACGcaagaaaatgacattttatacaaACTAAACTTgctagaaatataaaaaagagaaaaggctgATATTTAGTAGACATAGCCTGCTGTTTTGTTCATTGTAGGTTAGTAGCTACAAAACTAGCACACCAAGCTAGCATAAACAAGACTTAAAGAAGTCAAATACACGGTTTTaagttaaaacaaacaaacaaacaaacaaacaaaccagttTTGGTGAGGAAATTATGATTAGTTGCACATTAGCATCCTTGCTAAGTGCTACCTGGTTGCTTCATTAGGATGCTGATCCATAGCGTCCTTAGTGATGTTAGGTAGACTGGtttaaacctaaataaataaataaatatgggttatataataatatatccGCTTTACTGAGCTTTCCAGGAGAAAATGAaggatggaaaaaaacattaactaacattttacacacacactttcccctgAGAGGCCGCTCTCTTTCCGGAAGCTCTGTCATTTCTTTGAGGAGTTGAAAATATCCCGCTAAAGCTCGTAAACATGGCGAACACCGGAGTCAGCGCGATGCTGCTGTCCCGACCCGAGGAAGGAAACGCAGCCGGACACCTGGTGTCCAGAGCCGGGGAAGGAGCCGCGTCAGGGCCGCTGCTGCCCTCCAACTCCTCTCCCACGGACACGGAGATGAAGGGATGCGCTAACGGAGACCTGATGGACAGCTTCGGGATCTTCCTGCAGGGCCTGCTCGGGGTGGTAGCCTTCAGCACCCTCATGTTGAAACGCTTCAGAGAACCCAAGCACGAAAGAAGACCCTGGAGGATCTGGTTTCTTGACACTTCCAAACAGGCCATTGGGATGCTCTTCATTCACTTTGCCAATGTGTACCTGTCAGACCTCACCGAGGAGGACCCGTGTTCACTATACCTCATAAACTTTCTGTTGGATGCTACACTGGGCATGTTGGTGATTTATGGTGGTGTGAAGGCCGTCAGTGCCGTGGTCGAGTGGAGGCAGTGGGACTCGCTGCGCTTCGGAGAGTATggggagcCAGTACAATGCACTGCCTGGGCAGGCCAGTGTGCGCTATACATCCTAATTATGATGTTTGAGAAGGTGGTCATCATCCTGGTGCTTCTAATCCCTCAGTGGAAGAAGCTGGCTATGCTGAACCCCATCACAAACCCACAGCTGGAGCTGGCTCTCGTTATGCTAATCGTGCCGTTCTTCGTTAATGCACTGATGTTCTGGGTCGTCGATAACTTCCTGATGAAGAAAGGCAGGACAAAAGCCAagctggaggagagagaggtTGGGGACGATTCACGAGGTAGCAGCAAGGTGCGCTACAGACGAGCGCTCTCTCACGACGACTCCGAATCAGAgATCCTGTTTTCGGCGGATGACGAAATGGAGGATTCGGACGGCGACGAGGATGTACGCAGGCTCACCGGTCTCAAAACTgttaagaaaaagaaacaccGACTGGGCATTCCTCCAGGAgaggtgaagaagaagaagcgtCCGCCTATGAAGGAGGAGGACCTGAAAGGGGCCCGCAGTAAGCTGGGCCTGAAGGGAGAAGTGAAGAGTAAAACGTATGAAGTCATGGTGGAGTGTGAACGTGTGGGCAAGACAGCTCCATCTGTGTTTAGCGGATTGCGCACTGGAACAGAGACGGCATTGGACAAACCCAAAGCTCCATCGGGGAGCGTCTTCGGCAAGTGAGGAGATCTGGAATCCATCTGCGTTAAAGTGAAAGATGGCTGGCAGCCCACTGTGGGCTAATACTTTATAAACCATTTTTAAGAAAGGCTGGTGTCTAGTTATATGATGATTGAACTGGAATTTGGAATTACACATATCTTATTTCCAAATGTTGAATtaatttttgtataatttgtacAATTTTTCTAAACAACTACATAGGTGTTTGGTTGATTCTTTTGTTCCCATTTCAAgtcttatattttatacattaaagcATTCTAACGACAACTTT

Function

symbol description
mustn1 Predicted to be involved in several processes, including chondrocyte differentiation; chondrocyte proliferation; and embryonic limb morphogenesis. Predicted to act upstream of or within positive regulation of chondrocyte differentiation; positive regulation of chondrocyte proliferation; and positive regulation of macromolecule metabolic process. Predicted to be located in nucleoplasm.

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU358141 False 607 TUCP 0.43 3 4467077 4469174
XM_026935461.2 True 2411 mRNA 0.43 8 4451040 4462199
XM_026935462.2 False 647 mRNA 0.43 3 4467059 4469196
XM_026935463.2 False 2222 mRNA 0.47 10 4451040 4469196

Neighbor

gene id symbol gene type direction distance location
sfmbt1 sfmbt1 coding upstream 1663 4432525 ~ 4449377 (+)
prkcdb prkcd,LOC108254977,LOC108435819,LOC107656045,LOC107600299,LOC107696837 coding upstream 32274 4390352 ~ 4418766 (+)
fgd5a LOC108255103,LOC108435806 coding upstream 70381 4334165 ~ 4380659 (+)
fezf2 fezf2 coding upstream 158672 4289572 ~ 4292368 (+)
thoc7 thoc7,LOC107696849,LOC107739288,LOC107551027,LOC107728626 coding upstream 366025 4080436 ~ 4085015 (+)
gnl3 gnl3 coding downstream 197680 4666876 ~ 4673687 (+)
spcs1 spcs1 coding downstream 211834 4681030 ~ 4683551 (+)
camk1b LOC108435972,LOC108254900,LOC107714490,LOC107566450,LOC107680448 coding downstream 225963 4695159 ~ 4740849 (+)
cse1l cse1l,LOC107750990,LOC107699361 coding downstream 1004694 5473890 ~ 5486512 (+)
LOC113539749 NA coding downstream 1037797 5506993 ~ 5510940 (+)
G301923 NA non-coding upstream 155524 4295308 ~ 4295516 (+)
G301921 NA non-coding upstream 156307 4294467 ~ 4294733 (+)
G301881 NA non-coding upstream 240779 4132280 ~ 4210261 (+)
G301885 namptb,LOC108255025,LOC108435731,LOC105912295,LOC107728616,LOC107590159 non-coding upstream 282394 4138782 ~ 4168646 (+)
LOC117599910 NA non-coding upstream 294314 4150542 ~ 4156726 (+)
G302281 NA non-coding downstream 262957 4732153 ~ 4733061 (+)
G302360 NA non-coding downstream 351496 4820692 ~ 4820899 (+)
LOC117599916 NA non-coding downstream 367956 4837152 ~ 4878375 (+)
G302530 NA non-coding downstream 706374 5175570 ~ 5217425 (+)
G302575 NA non-coding downstream 1053338 5522534 ~ 5565014 (+)
cadpsa cadps other upstream 172367 4158232 ~ 4278673 (+)
LOC113539463 adamts9 other upstream 537954 3850561 ~ 3913086 (+)
LOC113539549 LOC108254930 other upstream 1727459 2715662 ~ 2723581 (+)
camkvb camkv,LOC108414427,LOC107718199,LOC107685970,LOC107715795,LOC107659532,LOC107576418 other upstream 2262123 2141522 ~ 2188917 (+)
mon1a mon1a other upstream 2390399 2053083 ~ 2060641 (+)
ptprga ptprg,LOC107752167,LOC106583020 other downstream 741448 5210644 ~ 5471561 (+)
LOC113539422 rusd4,LOC108255275,LOC106582904,LOC106565791,LOC108435115 other downstream 1731250 6200446 ~ 6293749 (+)
tmem167b tmem167b,LOC107592590,LOC107555997 other downstream 2028864 6498060 ~ 6502636 (+)
cpne5b LOC108436414,LOC108280970,LOC103367600 other downstream 2194772 6663968 ~ 6779358 (+)
lrrn2 lrrn2,LOC108425772,LOC107739267,LOC107603068,LOC107675837 other downstream 3505395 7974591 ~ 8026929 (+)

Expression


Co-expression Network