G302530


Basic Information

Item Value
gene id G302530
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 5175570 ~ 5217425 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU358624
atatatacatatatatatatatatatttttttttttttttgcatgggaAGGGTGGGCACTTCCTATAATTCTCTCACAGGTTCTCTGTgttctgtattatttttagGATTGTGCAGCTTTGAAAAGTGagcgctttttttttctcctggccCTGTTTGATTTGTTCCACTAAGGCCTGCTTGGCTTCCTGTCCGAATCTTATGTGGGCAGAAGGCTGATTTCATGCCGCTCCATTATCCCAGCTCAAACAGCGAGCAAAGCGGCCAAAGCTGTCTGCATCCTCACCATTTAACTATACTCCACGTCCTTACACCGTCTGCTTCGCTTTCACTCCGTCTCTGTCTCGGGTTCATTTAATATTCCAGTTAATTCAAAGGAGTTATCAGTGCGGCTCTTGCTGTTTTGTAACTCGTCTAAGCGAAGCAAAGAATAGCAAATCTCTTTTAGTCTCCATTTTAATGATATATGTGAcaggcagaaaaataaaaacacaactaaATAGCTAATTgccagaaaaaaggaaaaaatacaagaaGAAAACTATCAGTAAATAAAGGAGACACTcaaagaaaacagttttttccttTGCAGTCAATCAGCATTGAGCCTTTTTTGAAATTAGTGACAAAGTTTTGTCTTAATCTATTAAATGACTGCCTCTTTTAATACTCTGAGTTTCTCTAATGTAAAACTATTTGTTTCACCGCTGCGCGTGTTCCAAAAAAAGCTCtccatgttgattttttttatttgaaagtcTCTAGCAGGAGTGTGAATTCGCTCTCAGACCCGTGCTGAGCGCACTTTAGATGATCACCACCATTAATTCAACACCGTTGGACAAGCTCACTCATGGTCTTTTGTGAAACGACGTCAACTTCATCCATCACTTTGTGGCTTTCTACTTCACCtcataaattattttacttttctacCTTCATTGATTCTggatctttatttatattttttattcctttaggCCTGGCGGTTGAAGCTTTTCTTCCAACTGGCAGTGATTTGTACCCTGATCAAATATTTAGAGTGAGAAGCTGCGGCGTCGACTCTTTCACTTTAATGGCGCGCCGTCGAGCCTAGTTTCCCACCTGCTTAAATCACTCTCTAAAGCCTCCCTGAAATATTCTGCCCCCAGAAGTCACTATCTTTTTTTCCCAATGTGGCGTGAGTCTTTTTATCTAAAGTTTGAATTTTTGCTAGTACTCTTTTGATGACTTCACCTCAGAATATTCACTGAAAAGTAGTCGATGGAACCTgctcacattttttttgctgacttTTTGAAAATTTGCTTACCATTTATATGAAATCATGCCTTCTTCAAAAGGTGTACGTTACTCTGATGAACTGAGACGAATCGTTGAATACAGCGCCGAAGGAAAAAAAGTCTCTATCACTACCACACTCTGTCCAGACCTTTGAAAACCTTCGGCGTGAGTTACGTAGTTCAAGGTATAGATGTGTACTGGGCACATGAAGTGTTTCTGAGCTGTTGAAGATCAGCACTTAGTGAGAGTGTGTTGAATCTCAGAGCAGCGTCACATGGCAGGGAATATGCCTCATCAGATCTGGATGTCAGATGCTGGATCTGTTGTGTTAGACTGAGGGAAAGGAACACATTAGGACATTTTGGGCATTTATACACATGTAGCAGTGCATGTATATCTGTCATTATATTGTTAGAGAGTCTGGCACTTTTCATCACTAAACATGGTCAAGAATTGCCTACTTCAATAGGAAGAGGTCATTagactgaaactgaaatgacCAACAACAGACTTTTTCTGTCGATTCTCAGCAAGCAAGTGCAGGGATATTCAAATACAATTTCATAGTTGCAGTTGCAGTGCAAGAAATGTCTTGCTTACGACAGCTAAcgtgactgaatggtgacaaaaTGGTGACTAATGATAATCatggctaaaaataaaacaatttaaactgGTTTTGTTCACATTTTCACTGGTGCTATGagctctgaacagatgagatgagactgttttgaatttgacacAGGGAgaattaaaacatatttctcTGCCTAATCAtctttaaatgttgtttttttttaaacaagccgaGTCACTAATCAGATTagagagagtaaataaaatgaaaaatctgtgaaaatgcCACCATTTTTGATCTAacgtctctagccctgtagctagtctctggtccgatgacctgccttcagctaaaatttacataaataaatgcatgtgattggatatgCATCAACCAACAAAAAGCTGAAAAGGTTCATGTGTAGAATTATTTTTCCCCACAGGTTTATCAGCtcttttacagtatttttttcaaGCATTCGGTTcagtccactgaaatacttcacTGTGCGCTGTGGGCGGATCATCAGAGCCGGAGACTAGACGATTCGTGGTATCTTCCATCCAAATCTCAACTCTGGTGACCCTTTTAAACAGACAGCCAGatgtaatttacacacactgccattcaCACATACTGCACATTCTCTAACGTTACATTATTCTCATTGCTAAGTGCTTTGCCTAATACCAGAAATATTTGTGAGCACACCAGGTTTATCTGGAGCTGAGAATGAAATGGCAGTCACGTGGCCTTGTTCTGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU358624 True 2626 lncRNA 0.39 2 5175570 5217425

Neighbor

gene id symbol gene type direction distance location
camk1b LOC108435972,LOC108254900,LOC107714490,LOC107566450,LOC107680448 coding upstream 434721 4695159 ~ 4740849 (+)
spcs1 spcs1 coding upstream 492019 4681030 ~ 4683551 (+)
gnl3 gnl3 coding upstream 501883 4666876 ~ 4673687 (+)
sfmbt1 sfmbt1 coding upstream 726193 4432525 ~ 4449377 (+)
prkcdb prkcd,LOC108254977,LOC108435819,LOC107656045,LOC107600299,LOC107696837 coding upstream 756804 4390352 ~ 4418766 (+)
cse1l cse1l,LOC107750990,LOC107699361 coding downstream 256465 5473890 ~ 5486512 (+)
LOC113539749 NA coding downstream 289568 5506993 ~ 5510940 (+)
LOC113539468 NA coding downstream 297283 5514708 ~ 5517420 (+)
bmp7a bmp7,LOC108435091 coding downstream 302697 5520122 ~ 5544024 (+)
si:ch211-253b8.5 LOC108254983 coding downstream 340143 5557568 ~ 5577596 (+)
LOC117599916 NA non-coding upstream 297195 4837152 ~ 4878375 (+)
G302360 NA non-coding upstream 354671 4820692 ~ 4820899 (+)
G302281 NA non-coding upstream 442509 4732153 ~ 4733061 (+)
G301923 NA non-coding upstream 880054 4295308 ~ 4295516 (+)
G301921 NA non-coding upstream 880837 4294467 ~ 4294733 (+)
G302575 NA non-coding downstream 305109 5522534 ~ 5565014 (+)
G302586 NA non-coding downstream 343188 5560613 ~ 5561524 (+)
G302585 NA non-coding downstream 360208 5577633 ~ 5580979 (+)
G303181 NA non-coding downstream 1132767 6350192 ~ 6351096 (+)
G303404 NA non-coding downstream 1418432 6635857 ~ 6659338 (+)
LOC113539599 tmem110,mustn1,LOC108435844,LOC107746891,LOC107656046,LOC107755187,LOC103359875,LOC107091502 other upstream 706374 4451040 ~ 4469196 (+)
cadpsa cadps other upstream 896897 4158232 ~ 4278673 (+)
LOC113539463 adamts9 other upstream 1262484 3850561 ~ 3913086 (+)
LOC113539549 LOC108254930 other upstream 2451989 2715662 ~ 2723581 (+)
camkvb camkv,LOC108414427,LOC107718199,LOC107685970,LOC107715795,LOC107659532,LOC107576418 other upstream 2986653 2141522 ~ 2188917 (+)
LOC113539422 rusd4,LOC108255275,LOC106582904,LOC106565791,LOC108435115 other downstream 983021 6200446 ~ 6293749 (+)
tmem167b tmem167b,LOC107592590,LOC107555997 other downstream 1280635 6498060 ~ 6502636 (+)
cpne5b LOC108436414,LOC108280970,LOC103367600 other downstream 1446543 6663968 ~ 6779358 (+)
lrrn2 lrrn2,LOC108425772,LOC107739267,LOC107603068,LOC107675837 other downstream 2757166 7974591 ~ 8026929 (+)
nfasca nfasc other downstream 3263670 8481095 ~ 8561702 (+)

Expression


Co-expression Network