G303437


Basic Information

Item Value
gene id G303437
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 6791318 ~ 6793226 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU359680
cactgatcagccataacatttaaaaccaccaacaggtgaagtgaataacttcGATTATTTCGTTACAGTGggacctgtcaaggggtgggatatattaggcagcaagtgaacagtcagttctcaaagttaaAAGTCTCAAAGTCACTGGTGGAGTCCAtgtgtcagagctgttttggtggcacattggggaccaacacaatatcaggcgggtggttttaatgttatggctgattggtgtatattcTCCACTATGCTGTCAGACATGACTACCAATATACAGTAGgCATCTGTTGCATTCACTAAGAGTGTGGACATGCTGTGTCGTATGTGGGTGGCTGAGAGACCTGAAGTTGTTCCTGAGAAGCATCTCCTGAAGGCCACAATGGCATTATCACTATACGTGAAGAGGAACTGCCCAGACTTGAAAAATCATGTGCGGGGGGCCATAGTCAACATTATTAACAATCGGCTCAGCAATTGGATCATGCAGCAGGGAGGCTGGGAGCAGGTCTCTAGCCTATGAGAATGAGAAGAATATGAAGTCAGTCCGTTCTCAGGAATTTTGCCTGTGAAACACAAGCTAAAACAGTGAAGAGACCAAGATTTCGAAAGGGCTACCACAAAAAGAATGAACTGAATAAAGGAAACACCTATGAGTCATAGGTGTGTGATATTAGGTTTTAATGGGTATGCaattatgccattttttttattcatctatcAAACTACAGACATTAAAACAATGGCAATTGGAGttcttttctttactttcaATTTAGCACAACCAGCACTTGTGGTATAAACTTGAATCATGGTTTGGATGattgtattgttattgttgtttatatATCATAGCCTTTTTGAGCAAAATAATTGTTTACGAGAAATGAAGAACTACTAATGTATTGCACTGTACTGATTGGTGCACGACAGTAACAATACATCATTGTAATCCTAGAATTTTCTTATTGTTAAATACATGCTAGAATAAAGGAAAAATTGGTGAAATAAGTAAAAGAAAAttgacattttg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU359680 True 1033 lncRNA 0.39 3 6791318 6793226

Neighbor

gene id symbol gene type direction distance location
kif21b kif21b coding upstream 140289 6589042 ~ 6651029 (+)
srpk1b LOC108254807,LOC108436365,LOC107592563,LOC107680449,LOC107751004 coding upstream 220345 6536593 ~ 6570973 (+)
mapk14b LOC108254806,LOC103028137,LOC108436315,LOC104939458,LOC103386138 coding upstream 257871 6506231 ~ 6533447 (+)
b3galt6 b3galt6,LOC106593203 coding upstream 301411 6487308 ~ 6489907 (+)
si:ch211-160o17.4 hipk1,LOC108254861 coding upstream 305158 6472900 ~ 6486160 (+)
LOC113539624 chia,LOC108255197,LOC108255198,LOC108435172 coding downstream 89162 6882388 ~ 6885522 (+)
zgc:113307 LOC108281030 coding downstream 110113 6903339 ~ 6917985 (+)
prelp prelp coding downstream 132040 6925266 ~ 6933151 (+)
il19l LOC108281068 coding downstream 144792 6938018 ~ 6940764 (+)
il10 il10 coding downstream 156709 6949935 ~ 6952787 (+)
G303404 NA non-coding upstream 131980 6635857 ~ 6659338 (+)
G303181 NA non-coding upstream 440222 6350192 ~ 6351096 (+)
G302585 NA non-coding upstream 1210339 5577633 ~ 5580979 (+)
G302575 NA non-coding upstream 1226304 5522534 ~ 5565014 (+)
G302586 NA non-coding upstream 1229794 5560613 ~ 5561524 (+)
G303645 LOC108281052 non-coding downstream 74492 6867718 ~ 6870772 (+)
G303658 fmod non-coding downstream 105264 6898490 ~ 6900530 (+)
LOC113539683 NA non-coding downstream 201619 6994845 ~ 7001112 (+)
G303806 srgap2 non-coding downstream 308544 7101770 ~ 7105529 (+)
G303889 NA non-coding downstream 622189 7415415 ~ 7420578 (+)
cpne5b LOC108436414,LOC108280970,LOC103367600 other upstream 11960 6663968 ~ 6779358 (+)
tmem167b tmem167b,LOC107592590,LOC107555997 other upstream 288682 6498060 ~ 6502636 (+)
LOC113539422 rusd4,LOC108255275,LOC106582904,LOC106565791,LOC108435115 other upstream 497569 6200446 ~ 6293749 (+)
ptprga ptprg,LOC107752167,LOC106583020 other upstream 1319757 5210644 ~ 5471561 (+)
LOC113539599 tmem110,mustn1,LOC108435844,LOC107746891,LOC107656046,LOC107755187,LOC103359875,LOC107091502 other upstream 2322122 4451040 ~ 4469196 (+)
lrrn2 lrrn2,LOC108425772,LOC107739267,LOC107603068,LOC107675837 other downstream 1181365 7974591 ~ 8026929 (+)
nfasca nfasc other downstream 1687869 8481095 ~ 8561702 (+)
shisa4 shisa4,LOC108254774,LOC107552307 other downstream 2742899 9536125 ~ 9551761 (+)
G305515 NA other downstream 3719445 10512671 ~ 10513270 (+)
LOC113539694 LOC105418794,LOC108431938,LOC108412963,LOC105419408,LOC108415465,LOC106522608 other downstream 3971048 10764274 ~ 10773442 (+)

Expression


Co-expression Network