G303806 (srgap2)


Basic Information

Item Value
gene id G303806
gene name srgap2
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 7101770 ~ 7105529 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU360102
gcggtttatttaaaaaaatgtttactacAAGAACTACGCATGGAATTATATAAGGTGTATTTGAGAGTAAACTACTATTGCTATTACTGTACAATCCTGTACCCCTCCCCccttccaaaaaaagaaaaccaaagagAAAGAATGTACCTCTGTAATGTACACCATTGTATATACAAAGTACATCTGAACACAGGTTTCTCTCATTAACAGATACTCAAGTGGACGACTATAAATACCTCTGACAAGACAGTTTACAGCCTTGTTTAAAATGGACAGGAAATACATATTTAACAATAGttacgattaaaaaaaaaagcaaacccTCACTCAATCTTCACCAACATACAATGCAGATTCAAGTGCATAATAagaatagattttaaaattgcAGACTTGAAAATATAAAGATTACATGTAAACCGAGACTTCAGCCAACAGCACAGTAAAAAAAGGTACACAGAACATCTCACCAAGCACTTTGCATGAATTAATTAtctattatgcattttaatgcctTTTTTCCATTCCAATTTGGTTTCCAGTTGCCTTATGAGGTATTAGGAACAACACAAAGAGTAAATTTCCAATCATAGCACACGGAGATATACCTAATCACCTGTTAAGACATGTAGAGAATtgcaacacaacacagaaaaataatatcCAAAAAGTTTTCCTAGAAAAGATGACCTCTTAAAATTTGCCTCGTTAAGCTGCTGATCTTTTTCTAGTCTTTTAGGTTGGATATTAACGAAGGGTTTCCAGGCGTTTCTCACCATGTCCATGCTGTTAAGGCTTTTAATAATGGGTCTTCAttgccctgaaaaaaaaaaaaaaaaaatcaactggccccatgcttgttttttcttcctgacctcgaaacacacacacccaacattATTTTTACTCCCGTTCACCACATCAAGGCTTGTATATAGTAAATAGTCAAGGCGTCTCTtcaaaaattctttaaaaagcaTAAATAGACTAGATGAAATGAGAAAGAGGTTCAGATTTTTCGATAAAATGGCCTGGTAAATCTGTAGTTAGAGATCTGGgaaatatataaacatgcagAAGACTGGTTTGTTGCAAAATCTCGAATCCAGAAATCCTTGGGCTGCAACCCATCAAAGAGCTTGGGCCTGACAGTATCTCTAATAACACTGAGATAAGACATAAAAACTGAGAAGCTGGATTAACCCGCTCCCAGTTTGGAGCATGCTCTCATCCATATAAAGACTAAGAAAAACGTTTGCCATTTTGTAAATCTGTATATCCCCAGTCAAATCCTATGAAGAGATTAAAGTTTTCCCAATCTGACATATAAAGCGTGAATTAATTGCCTCCATTAGGCGGTTtacactatacatacatataaacatacataGAAACATACTTACAGATACACAGTTAGCATGATGCAAACTCAAGGCCAAATAACGGCCCACGAGAATTGTACATAAATTCAGGCAAGGCAGAAGGaaaccattcatttttttttttttttttttttccagttataATCCTAATCTTAATCATTTCAGGTATACACAGAAACACTCTCTGTTCTGATGGATTATGTCATGTTTGACTACTGATAAGTAACTGTAGGAGAACATGAAGAGTAGGCTATTGTGAATCTGTAAGTGCTTGTGAATCTGGTGTAAGAATGGAAGGGTCTGAGAAGCAGCACAGCTTTGCCTTATCCACCATGCAAGTAACGTGATAGTTTTAGGATTTGCTGTATAGTACAGAGTCAAGCTGGGAGATAGAAAGGCAAAATAGTTCACCATATTACTAAGACATAAGCTTTGTGGACAAAAATGAATTGCACGAatcgttttttttccctaataatTGGTTACGCCCCAATAAAAGAGCTAATTTCTGGCAGGTAAGGATGCCACCAGTGTCTTGAGATCTCTTCTACTGATTGGTATGCAATTCAGCTAGAGTTTGGTGTTTCACATGCGGTTCCAAATAATCCCACAGTTTTATCCATTTGTTTACAGACCCATTCAATCAGATTTCAAACCCTCCCACTCAGATCCAaccaggcattttttttttgttgcatgcAGACTGATTGATCACGTGACACTGATGAGTTACATGCATCAGCAGTAAGTGAATGTTTGGCCACTTTTGCACACATTATTCCTGATGGCATGTGATTTTGGAGGGAATGTAAGAATAACGTAAgctagcaattttttttccatatggGTGCCAAGCACCAGTAAGACAACAGAAAGGAAAAGGTTCAGTGTGAGTGCTACTTAATAGTATGCAGCTCCTCCtttttttactcctttttttttttggacaaaaaaagACCACGGTCCCGCCCACTTTTTTACCTACTGATTCAACTAGAGAAGATAAAGTCGCTGCGATGATCAAAAATTGCAAATGCGACAATATCTGTCAGTACTGCTCTTTTCATGTGTTGACATTGTATAATAAGGCGAGATgcgatttttatttattttttgtcctgAGAGCTTGCCAGGTGCTTGTGGATAAATGGTTAATAATAGTTCACGGCTAACAGGCTAAAGGTATATATATAACTGCTGATTAGCATTCAAAAAAGTTAGAATTAACAGTTATCGAAAATAAGAAAGTAGGTGTGTATTGCCATGCTGGAATTCCTACAGAGAAGAAGTACTGAAGCTTTTGGGCTTTATCCTGAATTACAACTGCAGGTGTATCCAATGTGAGGAGGGTACAAGCCAACATCGCTTATCCTGACGAAAACAAGGACACAATCTCAGTACTTAAAAAAGCTgcatataaatacacagatacatTTTCCACCGCAATGCTATGGAGTTCATAGTAGAGTATTGCAGTAAAGTTCAGTTTCCGTCATGGCACACGTAAAGTCCAGCTCCCTCAAGAGTAAGTATTTAAGTAAAGAGAGTGGAAGGAACATAAGAGTTATTCACAGCTacatattttccaaaataatccaATCCAATTCacaactcttaaaaaaaaaaaaatcattaaacctAGATTATAAAGAGGGATCGAGAGTGTTCACGTCCCAGCCAGATTTCTTTTCTTGGATTTCAACAGTGCTGAAAAATCCCACCATGTGCATGTGgaccacacacagacaatacacacactcacatccacACACTGCATTTCAGAATTGAGGTTACTGTccataatgaatgaattaaaagagGTTAGTTATTTATCCCTCCACTGACAATCAGGATAAAACAGCGGCTGGATTTTGGAATCACAATAAAGCAAGGTTTTATGGATTTCTCAAGCCGGGCAGGATTTATCGGTAGGTGTAGGAGGTGGTGGGGGAGATGGAGGGATACTAGTGGTGCTGCTGGAGCTGCTACTTTTAGGGAAGACTGCAGGTTTGGGTCTGGTGGCTGGCGGCCGGTTATCTCGGAAAGTGGAAGTGGAAGGAGAGAGTGCAGTGGCCGTCGTTCCTGAGGACAGAGGGCTCTTGGGTGCTGGGCTCTTGACTGGGCGTGAGGCGGAGGGCACGTCGCTGGCCGAGCTGGCACTGCGCTGGAGTGGGCACTGGAGCGGGTGCTGGAGCGGACGGGAGTGCAGCGGGCTGGATGGTTCGGAGGCTCCGCCACTCTTCAGCTGCTCCAGAGTGTCGAGCACGACGTCGGGTGCCGGCTTCACGCTGCTCTTCTTGTCCAGATCCTGCAGCTCGCTCAGCGCCGTG

Function

symbol description
srgap2 Predicted to enable GTPase activator activity; protein homodimerization activity; and small GTPase binding activity. Involved in glomerular visceral epithelial cell development. Predicted to be located in several cellular components, including dendritic spine head; phagocytic vesicle; and postsynaptic density. Predicted to be active in cytoplasm. Orthologous to human SRGAP2 (SLIT-ROBO Rho GTPase activating protein 2).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU360102 True 3712 lncRNA 0.40 2 7101770 7105529

Neighbor

gene id symbol gene type direction distance location
il10 il10 coding upstream 148983 6949935 ~ 6952787 (+)
il19l LOC108281068 coding upstream 161006 6938018 ~ 6940764 (+)
prelp prelp coding upstream 168619 6925266 ~ 6933151 (+)
zgc:113307 LOC108281030 coding upstream 183785 6903339 ~ 6917985 (+)
LOC113539624 chia,LOC108255197,LOC108255198,LOC108435172 coding upstream 216248 6882388 ~ 6885522 (+)
fam72a fam72a,zgc:101564,LOC108425783,LOC107590148,LOC107656018,LOC105017400,LOC107548849 coding downstream 108180 7213709 ~ 7218371 (+)
foxp4 foxp4,LOC107728618 coding downstream 303306 7408835 ~ 7541196 (+)
mdfi mdfi,LOC106565692 coding downstream 444257 7549786 ~ 7593458 (+)
ppfia4 ppfia4 coding downstream 600699 7706228 ~ 7834194 (+)
si:ch211-86h15.1 LOC108255151 coding downstream 750315 7855844 ~ 7896743 (+)
LOC113539683 NA non-coding upstream 100658 6994845 ~ 7001112 (+)
G303658 fmod non-coding upstream 201240 6898490 ~ 6900530 (+)
G303645 LOC108281052 non-coding upstream 230998 6867718 ~ 6870772 (+)
G303437 NA non-coding upstream 308544 6791318 ~ 6793226 (+)
G303404 NA non-coding upstream 442432 6635857 ~ 6659338 (+)
G303889 NA non-coding downstream 309886 7415415 ~ 7420578 (+)
G303891 NA non-coding downstream 315177 7420706 ~ 7446186 (+)
G303892 NA non-coding downstream 331926 7437455 ~ 7448739 (+)
G303966 NA non-coding downstream 598687 7704216 ~ 7705243 (+)
G304193 NA non-coding downstream 797826 7903355 ~ 7903564 (+)
cpne5b LOC108436414,LOC108280970,LOC103367600 other upstream 322412 6663968 ~ 6779358 (+)
tmem167b tmem167b,LOC107592590,LOC107555997 other upstream 599134 6498060 ~ 6502636 (+)
LOC113539422 rusd4,LOC108255275,LOC106582904,LOC106565791,LOC108435115 other upstream 808021 6200446 ~ 6293749 (+)
ptprga ptprg,LOC107752167,LOC106583020 other upstream 1630209 5210644 ~ 5471561 (+)
LOC113539599 tmem110,mustn1,LOC108435844,LOC107746891,LOC107656046,LOC107755187,LOC103359875,LOC107091502 other upstream 2632574 4451040 ~ 4469196 (+)
lrrn2 lrrn2,LOC108425772,LOC107739267,LOC107603068,LOC107675837 other downstream 869062 7974591 ~ 8026929 (+)
nfasca nfasc other downstream 1375566 8481095 ~ 8561702 (+)
shisa4 shisa4,LOC108254774,LOC107552307 other downstream 2430596 9536125 ~ 9551761 (+)
G305515 NA other downstream 3407142 10512671 ~ 10513270 (+)
LOC113539694 LOC105418794,LOC108431938,LOC108412963,LOC105419408,LOC108415465,LOC106522608 other downstream 3658745 10764274 ~ 10773442 (+)

Expression


Co-expression Network