G303891


Basic Information

Item Value
gene id G303891
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 7420706 ~ 7446186 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU360207
GTTGGCATTAGAGGAGAAGTGGCATAAGGCTTATAGATCAGATCCAATTGCAGAAGAGAGAGTCAGGAGAGCACGTAGTGTTGGCCCTTGCCAAGCGCTCTCAAGCACGGGTCAAAAGCACGCATCGCTTTTTTCAATGTGTTTGTGCCGTTACTGGTCTGGTTTAAGGCAAGGCAACGAAGGAAATGATCACACCTTACACAAAGATAAAAAGTTGTAGTACTTCGGTACTACCGTAATAGTGTTATTAGAGCTTTTGAATGtaacaaaacagcaaaagtgCATTTGCCAGACTAATAATGTGTTTTATCATTTCATCATCTTTATCATAACCAGTACGTTTAGCATAGTGTGAATCTTAAAAATCAGGATCAACTTGGAGATCCATGTATACGCAGTCTATCCTTGGGATTGTTGGGATTGGGAAAAGTGTTTCAGTAAATATTCGTTCGTATTATCATCGCCTGAAGCGAATAGGAGCTCATGGTGGAATTCGTCTGGTGCCTGTCTCGGCTCTGTAGTCTGAGTTCTGGCTGATGAGGTCATTGCTCAGGGACGTGGCAGAGTCATTTCGGCTCTCTCTGCAGGGATTGGTTACCATTTTGCGCCAGTGACGAGGCCTTATTTCAATCCCCATCCCGCGACAGCCCTCCTGTACAAAATACCAGATGTCCCCCTCATTCATGGAAAGtatggaaagtttttttttttccttttttaacccTCTTTTTTGAAAGCAGATCAGGTTTTAGGGACAGTTGCTGATGGAAATGAATGAGGACACACTGTTGACACATGTCTGACCTGGCCTGTAGGTTGGCCTGCTCTCTGTAGTGAGATATATCTACTCTATCACAAAAGCGACAAGAGGGCAGTGAGATTGAAGGAGAGAACTTTTCTCTCGCcaaatcttcttttttttttttttgctcctgtatttaatttctttttctgtctctgagtGTTTAGGCTTCTACTCTTTTGCAGGCCACAAGCAGACTCTTTGATAAAAGCTTTGTAGATATTTGAGCAAGGCCTCAGTAAACAGGCCGGTGTTATTTTCTCAGCCGCTGCGTAAATACGAAGGCCCCTGCTTCTCGCGCAGTATCCAGGCAGCTAGCAAACATTCCACCAGCTTTTCCAGGCTTTGTCCGGCTGGCGAGGATAAATTATAGCTCAGCTTTTGTTGAGCGTCAGCTGCCTTAAAGTGACCGCACATtgtgaatttctttcttttttttctttttcttttggacTTGATGACTTGTAGGCAGAGCGAGCGAAGCGGGATGGCAGCGAGGTCAACAGGAGGCCGCTTTAGATAAACAGCGTAGCTGGCCCGCGATTGtgcatatttatttgaaatcgGCCTGGATCCTATTAAAATGTTGAGAAGAAGTGGTAAACAGTGCGGTCGCCACAGCCTATGAGTGTATTCACAGAACTGTAATTGAGGGTTGAGTTTGTGTACTGTTAAAAACGGGGGGCCCCTCCAGACGCCCGGTTTATGGACCGAGCGCTAAAAAGTGAGCACGGTGGCCCAAAGCAGCCCAAATCTTCACATGTCGTCAGTGTTGGGGTTGCTGCCGAATTTGTTTTCCGGATACAGGAGAGCTGTGAAATGGATCGGGTGAAGCAGAGGGCACTTTTGATTGACACATTTCAAGTGGGTGGGATCAGAGCTTTCGAAGCGGCGTGAGCTTACTGTTTTGCGGAGCCTAAACCTCTTCCATATGTGAGTGATTTCATAGTTAATATCAAAAACGGTGACGTTTCCCTCCACGCTCAATGCTGGTACTTTCTTTATAAACTTAAACCAGAtctgctcattttctcactggcttgcttttttttttctattatggATATTTTTATATGGCACTTGGATGAGGCCCAAAATATGAATATTGCATTGCGTGTTTAAAGCGGAGCTGAAATCCGATTCGCATGCTTTAACTAGACGACTGTCGTGCAGACAGCTCATAAATgctcagtgtgttcagtaaatTTTCCAGTTGAACTGTAGGTAACGTAGTACCTGGCTGAGCACTTTCACTAAAAGTTGcaccttctttttttaaaaaaactttgcCTCATAGCAACCGCCTGGCCTTGTTGATATGTCTGAACTCGTTGCACTTTATTGCTTGTGACAGGCATGAGGAGTTAATTAATGTTGCTGGAAGCCCAAAGCCTTTATTTCTGGGATACCGTCCACTGTCTTGACGACACACCGCAACAATAATGGAGCAGTAAACTACAACTCCCAGGTGTAGACATGGTTTCACGTGCACGGGGCAGGTCTGTTATTGAGCATGACTGCAACATAAAGAAGGGAAATTGATCCTTGATCAGCACCCAATGGCTTTTCTTAGCGTCCATTACTGAATTTCCGagactttaaaaaaaggaagaaatgaggagggggtgtgtgtgtgtgtgtgggggggcgTGTTCGACAAATACGCAGCTGTCTCAGCCTCCCCAAGCAGCTCTGTAAatagaaaaaagcaaaagagtGCGAAAACAATAGTCTTCCAAACAGCAGTTGAAATCTACCTATCAAACTTAAACACACTTAGTTATGTGTTGAAATGATGAGTTTAGCAATCATGCAGCTtggagatcttttttttttatggagaGTGTATCCAAAACGGTGGACGAGATACCTGAAATAAAAGAGACGACTGTTTGGGACACCTGTAGGTTGGAATTTCATGTAGCTTGTGTGAAATCATATCAGTGGATAGTTcattagttttaaataaaagcgtAAAATATTTAACTCAATATACTGCAGGTGAATaggttctttaaaaaaaaaacagttgtcaTCAGTAATCTGTCTTTGCTAGTGGATTGCTGATACTCTTTTTACCCCCAGAAAATTTTActaatttatgcaaatgaggcttcatctaattaaatatgcatatgtTTACGcactgcacaaaaacaaaaatctcgTCTTAGGATGATATTAGAATTAAAACACCACTTCCCAGTATAAAAATCCATCATAAATCCATCAATTATCAAAATTTTGAATTCTGTAGTAAGCTTTAAAAATTGGAATAGGAATTCAGATGAAAAATTTTCTAAAAACATGAGATCTCTGGCTCTGaacattttaagatttttagagttcaaaaaataaatgatattgcACATACTTCCACACTAGCAAGTGCGATCTGTAAGGTTTATAAAAGAAACTGACATACTCTATATGTCATAGTGACACTTATTTATATCAGGAAACCAGCTTTTAAGGGAAATATGACGTGATGTGATTGTGTCATGTGGGCGGAGCATCGGAGTTGCTAAGTTTAAGATAATGCTATGGTTGTGAGtggacaaaaacagtgaaattaatGATGTTAATTCCTACAGTTTAGATACAGCTTATGCAACAATCTGAAAACGATTGACATGACCTAAATTTCTActtgtagtgtcttgccttaagtTTAGGGTGTGGTCAAGGGAAGTACAAAAGTAGGCCCTTTAAGCATTAGGCTACTTGGAATATCAAACACTCATGCCCAAGCATACGCAACGTTGCTTTTTTTCATTCCCTggcttgctttctctctctttttcgctctctctctctctctttctctctctctctcacacacacacacacacatggattaTACTCCTGTTTACAAATGAGCTAACCTTTGGTCTGCCCTTTCGTGCTGATAAGTTTACTGCCATGCCTAGCGCCTGCTCGGCGCGCCCCTGTTACAAAGCTAATGAATATTCATTGGTCGCTGAGTGGGATCCATAAGTGCCGCCGTTTGTATtgattattgtgttatttaagTACCTTTTATATCATTCAGCAGAGTTAAGCACTGTAACCCTCGCAGCCGCTCCAGTCCACACTCATTAAAATACCCAGCGGCTCTTTTTGAACGTATGAGCTGCGATTGGGTGGAATGTGGAGAGAGCATGGTGGGCTTACAACAAGCTACTCAGGAAAGGCAGGTGAAGTAACTGATGTGGTCTTGGTGTAGATAATATGACTGCATGGAAAATTCCTAGGAAGTAAACGATTTGATtggatttcatatgaatgaagctaaaacaaaagtgaaaaaaaaaaaacgatttcaACCGCTGAACTGTATCTAGCTCTAGTAGCTCTAGTAGCTTGTAGCATTTCAAGAATTCTCATTATTTTACTCTTTGGAGTGTCTGAGGATTGGAAGGCGGTCATAGTCATGTTCGAAGGTTTGAACTATTTTACCGGGCTGCCAGCATTGCTAACAAAAAATcctaggaaaaaaagaattttatgaCAAAAACCCTAGCGTATGATGAGACGGCTAAGTTTTTTCAGATGTGcaccaagcaacagtaagaaaacaagCCAAAATTTCACCCTCTTTCTTTCTACTGGTTCATGAATTCAGAGGACAGAATTTACCTGTGGGAAGTCAGCGCAAAATGAAAGTCAGTGCAACCTATTTTTCATGTTCTGCCAGGTGAATTTCTCTCACGTTTTCTCTGAGAAACCAGAGAAGCATTATTTTTCAGGCGTCTCTTATATCACCGTAGCGAGGTATCAAAAGTTGTAAAAGTTATGGCTAAACTGTAGATTCTTGCATCTCTGTTCTTGTGTGAGAAGTTAGAAATGGTTAAAGGAAAACTCTTTCCTACACAAAATTGTCtaataatggaagtctaagttGTTGAATTCCATGAGGGAATGTTTACAATATGCAAGTATTTAATATAATGCAAATTAAGAATTAAGAGTAAAGGATGAGAATGAGAACTACATGAAAGAATGTCTTACCAAAGCTGTATTTATCTGGTTTTACTTAAACAGTACGGTGAAAAGGCAATACCACTTACTTAGGTTGGTTACTTTGGTACTGCTTCATCATACATTCTTCAATTTGGAAAAGTAGTCCCATTTCTGATAGGCTGATTTACGTGAAATTAGAGCTAAATATACAAACAATTTTAACTGAAGATTTTATAAACCATTCTACAAAAATGTACTTAATGTTTATCACCTGCCCCaccaactgcccttagacttccattaagAGGACGTTTCCAGGAAGTGAGTTTCGGTAATCACGCATACACTACAGACGCAACAGATTAGACGGAATTTCTCTAATCTGGATTATTTCTTTAAAGTTGTATGGAGGGGTAGggttctgcttcttcttcttctccttttttttttttttttttttttttttttttttttttatccaatcagTTTGCTTCTTGAAGAGCAAATAACTTGGAAGCGCTACGCTTTAATTGGTGTCTCTCTGGCCACTCCCTCCCTCTACCCCTCTTGTCTTTTTCTTACTATAATCCCAGTCACTCATCCTTCAGTCTTCATCTTGGCATGACCTGTGCTTTGAAAGTCATATTCATAACCCACGTGCGCTATTTTTGTTGTAAGACCGATTGTTAAACCGGAAGCCATCAAACCTTCTATGTTAAATACAACCTGCGTATTAGTTCCTTGCCCTTTCGTTGGCCTTTTAAACCATTCCAGGATGTCAGGAATGACATCCTGCCCGTACGTATGGACTTGAGCGTGGTCTAGACTGGACGCTGGACTCTGTCTCGGTCATGCCTCTGCTAACTTTCAGAGTAGACTGTTCTGCAACTGATAAATGTGATGTCTGTGAGTGCCCTGCACCTATTCCAAATATTTGCCAGGATCTGCACGTGTCTGATGGAGACGGAGACTCATATAGCAATCTCCACTCTCTTAAACGTCAAGAGCGGGCTGGAAAATCACTTAATGCAGgtcagaaaagagagaaaaaaaagggtggTGGTGGTTGAGTGCATGTTTGCCCTGGTGGcttgcacacactcacacgcacacactctcgcTCTGAAACGATCTCATCAGGCCGGAATGTCGGCGGTGTTTACCTATCGCGGCGGAGCCCACCTGATTGAAGGGCTAATCTTTATGGGCTCTGCAAACAGGACTTTGCCTCTTCCGCCTCAGGACCGAATATGGCCAAATACGCATGGCAAGAGCACCATATGGCACATACAACcacttattttcttttccttttaatgCTTTCTTTTTATTGCGGCAGATTCCTCTCCTTTCATGGTTGCCCTCCTTTCCTATACCCAGTGtgaatcttcttttttttttcccaccactCTGAAATGTCCTTGATAATTGAATTGTCCTTTACACACTTCAAATGGTTATTGTGACGGTTGGCAATTAAGCGTTTTCCTCTGAAGGCTTGGCAGATATATGTAAGAGTGCAAAATCATGGGATACGACCTGGCATGGGTTCAACAAGAGATGTATCCATTCTCCAGAAAGTAGGACGCTAGTCTTTAACCTAGACACGCTATTACCATGAGATCAAAGTTGTATCATCAGCATTATGAATATAGatggttttgttcattttctcgCTCCTTTTATTCCCTCTTTTCGTCTCGCTCTGCATGTTAAGAAAATGAATTGGTTATCTTTGGATATGGGGCGATCTCGTTTTAACTTCGAGGTAACGTACTGTAGGGTTGCCAGTACAGTAAAATTTGTGAAACTAGCATTCATTCCCAATGTTTGCTTTTGATAGACTTTAAAGCAGACAGTCAGAAActccttcatcacacacacatacacacactgagttcTCTAACATGCTGGGTCAGTGAGGAGGAGAACAAGTCTGTTAATTCCTCTTTGAAGCAGAGCATAGAGCAGAAGAAGGGATCAAGTGCTCCTGCATCTATGCGTTTTGTGTACTAATGAGTCTCACCTGCATATCTTGGACCTGCTCCAGGCGATCACAAGAAAGAAAAGCTCATGacaacacgttttttttttttttaaactgtaacaCACAAGACCTACATATAGGAACATCTTGTACCATGTGTGAAACAATATTCCCAAATGATGTACATCTACAAAGCACTCAAgatgtcctttccccttcagtcaTGTCTGAAATTCCGTGGGTGCATTCAAATCCTCATTTCTTTAAGCAAGTGCCTAGACAAAAGGCCCTCCATGCTGGAGATGCAGAATATTGGTCTATTTTAATGCCACGAGTGCTTCAAGTGAGTGGCCAGAGGGACAGCAGATGAATGCCGAGTGGAGCAAGCCGGAGAAAGATGGCcgccttgtaaaaaaaaaaagagagagagagagagagaaagaatcaCATGAGTGCTTGGCTAAGCGGTCTTCAAACGGCAAGCTTTCCTTTACTGTCAGGACATTCCTGAGAGGCTGATCGCTAATGAGAGCTGGGTGGCTGAAGCGCTTTGATGCCACTGAGGGAAGAGTAAGGTGAAGTCTACTAGGAGACACTAGGAGTTTAGAGTAGCTCTCTTTCGCAACCTCAGTGCCCTTCTCTTAgtctctttcattcatttgttctcCTCTCTGTTCATTTACAGGAGTTGCACATTTCTGTCTCTTCCTGCTGTCTGTCTTGACAGCACCAAAATCCTTTAACAATCCACATGACTCCAGTTATGCGAAAAGAAACAGGTTAGGATTAGGCGCCGAGTTAGCGTTTGCgcctttttattataaattcattCGTGTGAAAACAAACCTTCGTCTGTTTGAATTCGTATGAATTTCTCATGAGATCTGGCTTTCATTTCTTGAAAAAATTGTTCGTTTTCAATCGTGTACATTGATGTAGTTTTGATTTCACATTAGGCATAAGGGTCATGCCCacaaaattataacattattattaatattatggtTTTGAATGATTTCACAGCTTCATTCAGCAACTCAAAATCGTTTACTCTGTCTTAATTTCTGTCACTTCTCTGCCTCCAAACATGAtgggatgtgatgttatagtaaaataatcaaccctcagttggtgtgatgtgacccaagttactgttaccatgccaaagttgattatattccaataacagcatgttttattcctattataccacaTCATTTTAccaacattaataattattgaatGACACTTCATGCATTTTAACCACTtacaattatatttaatgttttggaatgtctgtgagacttcctgttatcacttacattatagcagctataaacagttccctctccagcatctcttttttttgtgttattgagaaaccgcaaagcacaACGTACAatctgttacaaagtgctgacactgaagactccttaaataacttaaattaatgtctccttacagaaagcttcaccatatcaacgattagattttttttttctgggttaAATAACAGCCCATTTTTAATACCTAGGTGTATGGTAGACACACATAATCtaattagtcttagattatgtgtatCTACCATACACCTAGGGGCCCTAGCTAGTCAGTGAGAAACAGTCTTGATCCTTAATCGGTATATTGGAGACTCAATTtcccatttctcttttttcacagTTGGTCCACTACAAGAAGGGCAAAACAGTTGATCTGTATGATAAAACTTggcttttctgaatttttttttttactgcacatGATATAGGGTCTTTATCTGTCAACAACTGCCACTAACAACTTCTCTCAAGTACTTACAcaacattcatatatatatgagtatatatacacacacacacggtcaatCCTACCCTTGTTTGCAATCAGCTACTGGAGGAAGTGCTCTCAGATCAACTCTGGTGCCTGCAAGATGTGTTCTATAACCACAGACTAACaacacataaatatacacacactctctcgctttctctctctctcgctctctctcacacacacacacacacacacacacgcatatacagaTGCGAGGACACACCTGCCCTCTGCCCCTTGGCCCCTTGGCCCAGCTTCGAGGGCTGCTAACACAAATACACCCTATCCTTCCGCACTTTTTGGGTGTTTGCATCTCCAGGGCAGTTCTTCCTGTtcaggcaaataaataaacaagattAATACAAGTCACTGTACCacccagtctttttttttttttgtcagcagtttttttttctgaatgagcATGTTTACTTCTAGATCTTGAACTGTTACATTTAAAGCCAGCTTTATTAGACAGCAGTGAACAGAATGGACTTTgtacttgatttttttcttttttttttacttggcaaacaaaaatgaaaagggTGACAGTACATCCTATAGTATTAATTCAGCTTCCACTTCAGCCTCTTCTAAGAATCGGTTATTCCCTCAGGCTAGGCCTCTTCAGTGTTGACCGAATCCTCTCCTTCACTAAATAAGATGCTAACAGAGGCCaaagggaagtgtgtgtgtgtgtgtgtgtggggggggatAGTGCACTCTTCTCAGTGGAACTGATATCGCATAGGTAGCCTGGGGGCGAATGGGAGATGTGTTAGCACAGTCAAGCCTGTCTCTCCCAATCATGTcagctttgtgtttgttttattaataaggCGCATTCCTGCGGGCTGACGCAAGGCTGTCGAAACAGGCTTTTGGGGACTTGTGCAAATAAACCTGCATAAAGCTTTTTCACACCAAGAGTTATGAGTGTGgtgaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU360207 True 9535 lncRNA 0.41 2 7420706 7446186

Neighbor

gene id symbol gene type direction distance location
fam72a fam72a,zgc:101564,LOC108425783,LOC107590148,LOC107656018,LOC105017400,LOC107548849 coding upstream 202335 7213709 ~ 7218371 (+)
il10 il10 coding upstream 467919 6949935 ~ 6952787 (+)
il19l LOC108281068 coding upstream 479942 6938018 ~ 6940764 (+)
prelp prelp coding upstream 487555 6925266 ~ 6933151 (+)
zgc:113307 LOC108281030 coding upstream 502721 6903339 ~ 6917985 (+)
mdfi mdfi,LOC106565692 coding downstream 103600 7549786 ~ 7593458 (+)
ppfia4 ppfia4 coding downstream 260042 7706228 ~ 7834194 (+)
si:ch211-86h15.1 LOC108255151 coding downstream 409658 7855844 ~ 7896743 (+)
csf1a LOC108280990 coding downstream 804339 8250525 ~ 8260663 (+)
cntn2 cntn2,LOC107727196,LOC107727774,LOC107558367 coding downstream 1141678 8587864 ~ 8630202 (+)
G303889 NA non-coding upstream 128 7415415 ~ 7420578 (+)
G303806 srgap2 non-coding upstream 315177 7101770 ~ 7105529 (+)
LOC113539683 NA non-coding upstream 419594 6994845 ~ 7001112 (+)
G303658 fmod non-coding upstream 520176 6898490 ~ 6900530 (+)
G303645 LOC108281052 non-coding upstream 549934 6867718 ~ 6870772 (+)
G303966 NA non-coding downstream 258030 7704216 ~ 7705243 (+)
G304193 NA non-coding downstream 457169 7903355 ~ 7903564 (+)
G304286 NA non-coding downstream 714495 8160681 ~ 8191673 (+)
G304289 NA non-coding downstream 715613 8161799 ~ 8165909 (+)
G304299 NA non-coding downstream 771682 8217868 ~ 8218135 (+)
cpne5b LOC108436414,LOC108280970,LOC103367600 other upstream 641348 6663968 ~ 6779358 (+)
tmem167b tmem167b,LOC107592590,LOC107555997 other upstream 918070 6498060 ~ 6502636 (+)
LOC113539422 rusd4,LOC108255275,LOC106582904,LOC106565791,LOC108435115 other upstream 1126957 6200446 ~ 6293749 (+)
ptprga ptprg,LOC107752167,LOC106583020 other upstream 1949145 5210644 ~ 5471561 (+)
LOC113539599 tmem110,mustn1,LOC108435844,LOC107746891,LOC107656046,LOC107755187,LOC103359875,LOC107091502 other upstream 2951510 4451040 ~ 4469196 (+)
lrrn2 lrrn2,LOC108425772,LOC107739267,LOC107603068,LOC107675837 other downstream 528405 7974591 ~ 8026929 (+)
nfasca nfasc other downstream 1034909 8481095 ~ 8561702 (+)
shisa4 shisa4,LOC108254774,LOC107552307 other downstream 2089939 9536125 ~ 9551761 (+)
G305515 NA other downstream 3066485 10512671 ~ 10513270 (+)
LOC113539694 LOC105418794,LOC108431938,LOC108412963,LOC105419408,LOC108415465,LOC106522608 other downstream 3318088 10764274 ~ 10773442 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G249277 NA non-coding CI01000058 null 2631160 ~ 2638355 (-)