G303892


Basic Information

Item Value
gene id G303892
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 7437455 ~ 7448739 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU360208
GTCAGCGGCACCTTGTATGAAACTGATCGAATTCCAACCACATGTTCGAATTTGCACAAATCTGAGCAATCTTCTCAGCTGACTTTACTAAAAGCGGCGCAACACAAAGTTCAGTGGTAAAGAACACTCTCTACCAATTACGATCTTAACTTTCCAGTGCTATTGGGAAAGTTTtgtatttatgcaaatataatgtgtaataagGAAATCTAAAAAAAGGTGGAAATCTTGTGGTCTTACTCTCGCTTCCTCGTATGCTACCTACATCTTAGTTCGGCTTAGGGCTCAAGCACAAGGTTCTCTCACACTCTCCAGGTTACGATTCTGGTCTGGACTCCAACTTTTTGGATTTAGTCATGCAAGACCCCCAATTAAAGCCAGaggaaattatatatatatatataatatatatttaaagaattCGCTGCTCCCTTAAAAAAAGGTGATATGGTACAAGCCTTTCCTAGTGAGGGTGTGCGTAATTACCAAGGATTTAAAGGCAACACATAGGATTGGTCCTAGATGTTTTTCCCCATGTTTTAATTGAATTTGATTGTGTTTAGGTGCTTGATGTGTTTAGGAGTTCTTAATCTGTTGATGTTGACCTCTAAAACTAGGCTTTGAACAACTTTAAACAAGCAAGACAGAAGtttaaaattcattcaaatactCTAACCTTGAACGAAGAGGTCTGAAAAGGTTAGTTACgttggcgttttttttttttttttttttttaacgcctATATTTCTTGCCTTAGGAAACAATCCTCTTTTCATGCCATCTtgttttTTTGAAAAAAAGGAGTTAGAAATTAAAAAGCTTCCAGTGTGTGGACAAATGTGTTACATTACCACAGAagactcactttttttttttttttttaaacttacagCAACCTGATTGATTTTGACTCCCTGAAGCAAAGGCAAGTTCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU360208 True 938 lncRNA 0.36 2 7437455 7448739

Neighbor

gene id symbol gene type direction distance location
fam72a fam72a,zgc:101564,LOC108425783,LOC107590148,LOC107656018,LOC105017400,LOC107548849 coding upstream 219084 7213709 ~ 7218371 (+)
il10 il10 coding upstream 484668 6949935 ~ 6952787 (+)
il19l LOC108281068 coding upstream 496691 6938018 ~ 6940764 (+)
prelp prelp coding upstream 504304 6925266 ~ 6933151 (+)
zgc:113307 LOC108281030 coding upstream 519470 6903339 ~ 6917985 (+)
mdfi mdfi,LOC106565692 coding downstream 101047 7549786 ~ 7593458 (+)
ppfia4 ppfia4 coding downstream 257489 7706228 ~ 7834194 (+)
si:ch211-86h15.1 LOC108255151 coding downstream 407105 7855844 ~ 7896743 (+)
csf1a LOC108280990 coding downstream 801786 8250525 ~ 8260663 (+)
cntn2 cntn2,LOC107727196,LOC107727774,LOC107558367 coding downstream 1139125 8587864 ~ 8630202 (+)
G303889 NA non-coding upstream 16877 7415415 ~ 7420578 (+)
G303806 srgap2 non-coding upstream 331926 7101770 ~ 7105529 (+)
LOC113539683 NA non-coding upstream 436343 6994845 ~ 7001112 (+)
G303658 fmod non-coding upstream 536925 6898490 ~ 6900530 (+)
G303645 LOC108281052 non-coding upstream 566683 6867718 ~ 6870772 (+)
G303966 NA non-coding downstream 255477 7704216 ~ 7705243 (+)
G304193 NA non-coding downstream 454616 7903355 ~ 7903564 (+)
G304286 NA non-coding downstream 711942 8160681 ~ 8191673 (+)
G304289 NA non-coding downstream 713060 8161799 ~ 8165909 (+)
G304299 NA non-coding downstream 769129 8217868 ~ 8218135 (+)
cpne5b LOC108436414,LOC108280970,LOC103367600 other upstream 658097 6663968 ~ 6779358 (+)
tmem167b tmem167b,LOC107592590,LOC107555997 other upstream 934819 6498060 ~ 6502636 (+)
LOC113539422 rusd4,LOC108255275,LOC106582904,LOC106565791,LOC108435115 other upstream 1143706 6200446 ~ 6293749 (+)
ptprga ptprg,LOC107752167,LOC106583020 other upstream 1965894 5210644 ~ 5471561 (+)
LOC113539599 tmem110,mustn1,LOC108435844,LOC107746891,LOC107656046,LOC107755187,LOC103359875,LOC107091502 other upstream 2968259 4451040 ~ 4469196 (+)
lrrn2 lrrn2,LOC108425772,LOC107739267,LOC107603068,LOC107675837 other downstream 525852 7974591 ~ 8026929 (+)
nfasca nfasc other downstream 1032356 8481095 ~ 8561702 (+)
shisa4 shisa4,LOC108254774,LOC107552307 other downstream 2087386 9536125 ~ 9551761 (+)
G305515 NA other downstream 3063932 10512671 ~ 10513270 (+)
LOC113539694 LOC105418794,LOC108431938,LOC108412963,LOC105419408,LOC108415465,LOC106522608 other downstream 3315535 10764274 ~ 10773442 (+)

Expression


Co-expression Network