G303966


Basic Information

Item Value
gene id G303966
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 7704216 ~ 7705243 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU360300
CGTCTCttgctgttcttcttcttaCGTGACCCTCTGCTTTCTCCGTCGCCTTCCTCAGAGTCCAGCTCTTCACTGCTGTCATTCACATCTTTAACCACATCGGCTGCTGACGACAGAACTTCCTGTACAGGACCGTGTGAAGCCTCCAGCCCACACAGCAGCTTTACCCTTTTTTTCAAACGCATTGGCAACAGCTTTTTTCAGTCTTCCCGACTTGACGATGGCAGGATCGGCGTTGGCATAGTCAGCCACCGTTACTGCAATCAAAGTGACATGACAACACAGACCGGAAGTCACATCACATCCAGTTACATGGATCAATTAAATTATGCAGCATAACCAGCTACATTCAATAACATCAAGCAAAAGTCAGAATGTTTCCTTAATGCATCAGTTACACGGGATTTATTGAAGAATCCcgagctttttatttatttatgtttttatccGCGTGTTAGACTGCTTTGCGTGGAaatagccagctagctagcactGCCTGCTAGCTCTAATACCTGACTCCGAGCAAACATCGTCGGCTCGAAACTTCAGCCGTTTTCTGTTCCCTTTCTTGGGCATGGCGACGACGCGAGTCTGTGACTGTCTACCGTGTCTGCTTGCCCTGCCATGTTTCCAGCAGAGGTAacgaaaaacagagaaaaatgagagagaaattgAAAGAAGCTCCTCCGGGATCTTCAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU360300 True 700 lncRNA 0.47 2 7704216 7705243

Neighbor

gene id symbol gene type direction distance location
mdfi mdfi,LOC106565692 coding upstream 110758 7549786 ~ 7593458 (+)
foxp4 foxp4,LOC107728618 coding upstream 163020 7408835 ~ 7541196 (+)
fam72a fam72a,zgc:101564,LOC108425783,LOC107590148,LOC107656018,LOC105017400,LOC107548849 coding upstream 485845 7213709 ~ 7218371 (+)
il10 il10 coding upstream 751429 6949935 ~ 6952787 (+)
il19l LOC108281068 coding upstream 763452 6938018 ~ 6940764 (+)
ppfia4 ppfia4 coding downstream 985 7706228 ~ 7834194 (+)
si:ch211-86h15.1 LOC108255151 coding downstream 150601 7855844 ~ 7896743 (+)
csf1a LOC108280990 coding downstream 545282 8250525 ~ 8260663 (+)
cntn2 cntn2,LOC107727196,LOC107727774,LOC107558367 coding downstream 882621 8587864 ~ 8630202 (+)
chia.1 LOC108255291 coding downstream 927018 8632261 ~ 8636810 (+)
G303892 NA non-coding upstream 255477 7437455 ~ 7448739 (+)
G303891 NA non-coding upstream 258030 7420706 ~ 7446186 (+)
G303889 NA non-coding upstream 283638 7415415 ~ 7420578 (+)
G303806 srgap2 non-coding upstream 598687 7101770 ~ 7105529 (+)
LOC113539683 NA non-coding upstream 703104 6994845 ~ 7001112 (+)
G304193 NA non-coding downstream 198112 7903355 ~ 7903564 (+)
G304286 NA non-coding downstream 455438 8160681 ~ 8191673 (+)
G304289 NA non-coding downstream 456556 8161799 ~ 8165909 (+)
G304299 NA non-coding downstream 512625 8217868 ~ 8218135 (+)
G304367 ppp1r15b non-coding downstream 689479 8394722 ~ 8402133 (+)
cpne5b LOC108436414,LOC108280970,LOC103367600 other upstream 924858 6663968 ~ 6779358 (+)
tmem167b tmem167b,LOC107592590,LOC107555997 other upstream 1201580 6498060 ~ 6502636 (+)
LOC113539422 rusd4,LOC108255275,LOC106582904,LOC106565791,LOC108435115 other upstream 1410467 6200446 ~ 6293749 (+)
ptprga ptprg,LOC107752167,LOC106583020 other upstream 2232655 5210644 ~ 5471561 (+)
LOC113539599 tmem110,mustn1,LOC108435844,LOC107746891,LOC107656046,LOC107755187,LOC103359875,LOC107091502 other upstream 3235020 4451040 ~ 4469196 (+)
lrrn2 lrrn2,LOC108425772,LOC107739267,LOC107603068,LOC107675837 other downstream 269348 7974591 ~ 8026929 (+)
nfasca nfasc other downstream 775852 8481095 ~ 8561702 (+)
shisa4 shisa4,LOC108254774,LOC107552307 other downstream 1830882 9536125 ~ 9551761 (+)
G305515 NA other downstream 2807428 10512671 ~ 10513270 (+)
LOC113539694 LOC105418794,LOC108431938,LOC108412963,LOC105419408,LOC108415465,LOC106522608 other downstream 3059031 10764274 ~ 10773442 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00013701 LOC107553398 coding CM030125.1 CM030125.1 39270881 ~ 39276649 (-)