G304289


Basic Information

Item Value
gene id G304289
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 8161799 ~ 8165909 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU360648
GCAGACACGCTAGCAGAATCTAGCACGGAGCTGGGACACAGTGCTGCTGCCAGTCAAAATGAGGTCCTTTAAGCAGCATTCCATTATAATGCTCATCCGACTTCCTGCTatgattcttatttaatattgatgaagaaaaatgaaaagcagaGATATGCTGCCTTGTGCACAGCGCATAGTCTGTGTGTGGcggctctataaataaaagaatattccTTTTGTGAATTATGGGTCAGTTTCTATAgatatttggttttattttggaccTTAGTAAGGCAGTATTTAGATCAGGTTACTACAAACAAACTACTGATGAtagacaggggaaaaaaaaaacctgtgtgtTCATTCTAAATaatggttacatccctaatacaGGAGACGGAAAAGGAGAAGGTAGTCCATTTGTCCCGTGCACACCTGACAGCAGCATGAGTGTCAAAGCTCGCTGCGTCAGGAACGCGTGAATAATAAAGCAGACCAATAAGTAGAAGCATCTGTCACAGGCAGGCCTCTGTCATCATCTCAGTGGGCGCCACGCTCTCAAAAATCCTCCAAACGACCCTTTCCATCTGAGTGAAAATGCACCATGTGTTACAAAATACAGTAGAGGACAAAAAGTATGCAATTTCTACCTCTATTTACAAATGCGTTTTTGTAGCTCGAGATAATCTCCAGGTGTAGCCATTCTCAGCTCGTTGCATACTCTGGACTCTTTGCAGAGCTGGCTTGCTCAATTAGCATAagctcacacactgcattattaGAGAAAAGATAGGAGAGCGGGCCGAGAATCAGCTGAACTCATTAATCATTACACAGTCATTCTTGACTTGGGAACAACTGTTGGCCTCTTCAAAGGTGTTAATATTCGCACTAATGGCAAACTGGAGGGCACAAAAGGGCAGAGGTGACAAAACATGTGCAACACACCTGCTGGTGAGGCAACACGAGCGTGCGGGAAAACGCTTCCCTGAACTGCTTTGTGGAAGAATACAGGACATTAATTTTAAGTTAATAATGTGTAAGAGATCACAATTTTCCAGGATTTTCTCCAATAAAGATGCAGCTTTGGGAAAAAAAGGTCACAACATCAGGGAAACCAAGAATTTGCATGCAGCTATTGCAAATAAAATTTGCATTTCTTCTTATGTTACATGTATTctgctgaaatgtgtgtgtattttaggcCACCTCAACGTCCACGCAATATTCAGTTCTCAATTGGGTGCAGTCTCGTAAGCGCATCTGGTCACATTCTGCGTGACGCAGAACCATTTATGGATTGCGGGCACAGCACAGAGCCGTGCTCACAGGGCTCAAGCCTCCTAATTCCCAGACTCCATCTACTTTGGGTGGGGAGGCAGCAGAAGACAGCACTCTCCCTTAATTAGAGGGAACAGTTGCTAGCCGAGCGAACGCAGCTTAATATGTTTTACAATAAACTGTAGTGCTCGGATTGAGTTCGCACTAGGAATGAAAATTTCTTGGTtatgctttacacacacatcccaTCCACAGTCACAGGATTATGTAAAGAGTACGACACTCGTGCACACACATGCTGGAAGAGGCTTTTTGATTTAAAAGAGGCTGCAGACCTGGTTTAAAACATAAGCTgaatatctcagaaaaaaatacattttattgcaGATCTATTAAATATTGAATGTAGCAGTGTGCGattttcacaattcatttaGTTCAtttgaattaatgttttaacgCAATTTGCAAAATGTTCTAATCAAAAGTGTACATGTTTATCTAtgcatattaaaattttttaattaaaacatccataaatgctatttaaaagtttaaaccaatatGAAGGAGAAAAACAGCTTTCTTACCCTGATAAACACCTcctatataaaatattctttatttaaaagaaatagtGTTTGCAGTATTTActatagatggtgctgttactatttttgcacatctacaTTATGCAAAATCCATTCCAATAAATCAAAAACTTTGAAAAATtgtgctatttatttataattgcattatgtaggaacaaaaaaatgaaactgtaatCAAGAATTGCACATGAAGTTGAAGATCTTTTTTTGCAATATCACCCAGACCTAATTGAAAGCAGGACCTATAAATAGTTTTTGATAAACATATTACTTTTAATGAGAATGCACCTATTAAGtgcaattaaaagaaaatctctaccctgaaacaaacaaaatatacaataatattgtGATGCTTTTAGTGATGTGAAACCCCGTGTAGAAGTAGTGTACATGGCAGTCGCTGAACTGAAGTTCAGTGTATGACGTACAGTTAGGTAGTGATCTATGAGATCACATGCATGATGGTGTTGACAGTGTTATTAGCCTGAACCCCTACGCTTTGGAACCTTATTTTGGGTGGttttgtgggtaatgtaggaaatcgTTTGGTAAAGTGAAAAAGCCCAACATGTCGATGAAAGGCGTTCAATCTAAATATGtggaatttcatttttaaaaaaatcttctgcaAAATTGAAGATCACACATTGATGATAAATACGGCAGTAGTtcagggtgatttttttttccctttaatgaCACGCTTCATTAATCACATTCCACTCCTAGAAACTAATGATGTGAAATAAAGGGAGCCGTATCAGCAGATTGCTAGAAATCACCACTTTTGTTGTACAGTTGTTCATTAGGTTCAGCGGATATTTATGGCAATGTTGATGTATTAGTCAAGCCATGTTCTATTTCCGAGTACACAATGTACACACTAATGTACCATGATTGCATTATACAGCACATTACATGGtctattatttacatatatagaAATCACAACGAGGGAATCATGGATTCAACCTGCATAactattttcttttataaacaaatagaatccaaatttaatttcaaatcaTAAATAAACTTACAAACATTGATATTAAGTCAAatatgtcataaataaataaaactatctGCTCTGGCAACATGCCAAAAAAGCAGTGCTGAACCgaactaataaaaatataatatatattgatATAGGACAAATTGTATATTTCCATATCACCACATGAAAAATAATCCTTCAGAAATCTAAGTGAGCCATGTGAATACTGAAATCTAATATTTACGGTTGTCCACAGTACGACAACAATATACACTTGCCCTTTTGCCTAAATGATTTATTAAGTAAGCCTGCCATATAGTTCACGTTATAGGAATTACTTATCATCAACTTAACAACATATTATTTAGTTGACGCCGAGGTGCTGAATGTGCTGAATACAAGATCATCACAAATTCATGCCCCGAGCTCCCCAACTAGCTCGCTGTCAACAGCCAGTTGAGAACAAGGAACAAAATCATGACACTCAGAAAGACCACatgaaaatgttataaatttgtAAATCCTTTTTAATTCAGTTCTAGCTTTCTCTCTAAACTGAGCTAGCAATATTAGCTTTAAGACCGCACACATTCTGAATGTTTCTTACTGTCTTGTCTTAGTCTACTGCTAGacacctagctagctagcatgccCTCGTACTCACATCAAGTTCTCATCTTCAAATCCTAActatgctaacatgctaactagctagcagcAGCCTGGAGACTTATCATTGAGTATGTGAAAACACGTGGCTAAAATTGAATATATGCAGTTTGCCACTATCGGACACTGACGCAGTGAAGACTGCTAACTAGTTAGCATCAGTCTGGAGCTGTAACAAAGCAGCTCATTTTGTCACCTCAAGTTAGAGCTTGAAAACAGTCAGCTAAAACTGAACATAAGCAGTTTGGCACTATCAGGCAACGACACATTGATGGTGTGGAAGCCCTTTTCGAAGGTGGAATAAAAGCTGCTCTTCGCTGCCGCAACCCTACTCGATGCAAGCTAAGTAATGtggctagctaatgcactttaaaatcaactagctaacattataaagaacaAGTGTAGCTTTTTGTGTCCACTATTTAAATTGggctaattaaattaaaaagagcTCACTGCTAATACTAAGTAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU360648 True 4025 lncRNA 0.38 2 8161799 8165909

Neighbor

gene id symbol gene type direction distance location
si:ch211-86h15.1 LOC108255151 coding upstream 265056 7855844 ~ 7896743 (+)
ppfia4 ppfia4 coding upstream 327605 7706228 ~ 7834194 (+)
mdfi mdfi,LOC106565692 coding upstream 568341 7549786 ~ 7593458 (+)
foxp4 foxp4,LOC107728618 coding upstream 620603 7408835 ~ 7541196 (+)
fam72a fam72a,zgc:101564,LOC108425783,LOC107590148,LOC107656018,LOC105017400,LOC107548849 coding upstream 943428 7213709 ~ 7218371 (+)
csf1a LOC108280990 coding downstream 84616 8250525 ~ 8260663 (+)
cntn2 cntn2,LOC107727196,LOC107727774,LOC107558367 coding downstream 421955 8587864 ~ 8630202 (+)
chia.1 LOC108255291 coding downstream 466352 8632261 ~ 8636810 (+)
chia.2 LOC108280999,LOC108425699 coding downstream 490750 8656659 ~ 8659829 (+)
zc3h11a zc3h11a coding downstream 507270 8673179 ~ 8683472 (+)
G304193 NA non-coding upstream 258235 7903355 ~ 7903564 (+)
G303966 NA non-coding upstream 456556 7704216 ~ 7705243 (+)
G303892 NA non-coding upstream 713060 7437455 ~ 7448739 (+)
G303891 NA non-coding upstream 715613 7420706 ~ 7446186 (+)
G303889 NA non-coding upstream 741221 7415415 ~ 7420578 (+)
G304299 NA non-coding downstream 51959 8217868 ~ 8218135 (+)
G304367 ppp1r15b non-coding downstream 228813 8394722 ~ 8402133 (+)
G304450 NA non-coding downstream 306175 8472084 ~ 8472314 (+)
G304453 NA non-coding downstream 314468 8480377 ~ 8480589 (+)
LOC117599908 NA non-coding downstream 503729 8669638 ~ 8671697 (+)
lrrn2 lrrn2,LOC108425772,LOC107739267,LOC107603068,LOC107675837 other upstream 134870 7974591 ~ 8026929 (+)
cpne5b LOC108436414,LOC108280970,LOC103367600 other upstream 1382441 6663968 ~ 6779358 (+)
tmem167b tmem167b,LOC107592590,LOC107555997 other upstream 1659163 6498060 ~ 6502636 (+)
LOC113539422 rusd4,LOC108255275,LOC106582904,LOC106565791,LOC108435115 other upstream 1868050 6200446 ~ 6293749 (+)
ptprga ptprg,LOC107752167,LOC106583020 other upstream 2690238 5210644 ~ 5471561 (+)
nfasca nfasc other downstream 315186 8481095 ~ 8561702 (+)
shisa4 shisa4,LOC108254774,LOC107552307 other downstream 1370216 9536125 ~ 9551761 (+)
G305515 NA other downstream 2346762 10512671 ~ 10513270 (+)
LOC113539694 LOC105418794,LOC108431938,LOC108412963,LOC105419408,LOC108415465,LOC106522608 other downstream 2598365 10764274 ~ 10773442 (+)
G305727 NA other downstream 2945830 11111739 ~ 11112518 (+)

Expression


Co-expression Network