G304600


Basic Information

Item Value
gene id G304600
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 8761931 ~ 8762253 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU361012
tataaatatacaatactTACATCAAATATGTGTTAAACAATGTGCTCCTTTTTCAGCTGCAGTATACAGTTCAACTGAGGCTGGTGCTTTCCTCAGGCAGACATGTGCTGCACTGTAGCAGCTGTGGCAGACGACAGTGAAAAATGACTAAGCTCCAGCCTGCAGTTACATCAAGCCTGCCCCATGAAGAATACATGTGTACCCACACTGTAacaccctctctctttccctctctcagtcCCTGTCTGCTGTCTGCCCACCCTATTCCTTCACTGTAGGGACGGCCCCCATCTGCTGCACTATAAACCCAAACTGTAAACAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU361012 True 323 lncRNA 0.47 1 8761931 8762253

Neighbor

gene id symbol gene type direction distance location
maf1a LOC108254834,LOC108425756,LOC106565397 coding upstream 61287 8693677 ~ 8700644 (+)
zc3h11a zc3h11a coding upstream 78459 8673179 ~ 8683472 (+)
chia.2 LOC108280999,LOC108425699 coding upstream 102102 8656659 ~ 8659829 (+)
chia.1 LOC108255291 coding upstream 125121 8632261 ~ 8636810 (+)
cntn2 cntn2,LOC107727196,LOC107727774,LOC107558367 coding upstream 131729 8587864 ~ 8630202 (+)
pnp4a pnp4a,LOC108254835,LOC103041505,LOC108411380,LOC107655042,LOC107727769,LOC107727193,LOC107685744,LOC107559547 coding downstream 51328 8813581 ~ 8819844 (+)
rem1 rem1,LOC108255017,LOC108411381,LOC107727768,LOC107655086,LOC105017066,LOC107727184,LOC107554936,LOC107685743 coding downstream 106766 8869019 ~ 8879676 (+)
rbm39a rbm39,LOC107727188,LOC107685714,LOC107602070 coding downstream 139420 8901673 ~ 8908531 (+)
nfs1 nfs1,LOC107601922,LOC107559867 coding downstream 156185 8918438 ~ 8926213 (+)
syt6b syt6,LOC107727826,LOC107560238,LOC107655078,LOC107749496 coding downstream 466189 9228442 ~ 9237329 (+)
G304599 sox4,LOC108255020,LOC106925895 non-coding upstream 288 8756598 ~ 8761643 (+)
G304575 NA non-coding upstream 43468 8718224 ~ 8718463 (+)
G304566 NA non-coding upstream 72222 8689493 ~ 8689709 (+)
LOC117599908 NA non-coding upstream 90234 8669638 ~ 8671697 (+)
G304453 NA non-coding upstream 281342 8480377 ~ 8480589 (+)
G304669 NA non-coding downstream 176806 8939059 ~ 8939687 (+)
LOC113539633 NA non-coding downstream 242438 9004691 ~ 9016994 (+)
LOC113539427 NA non-coding downstream 257347 9019600 ~ 9021252 (+)
G304898 NA non-coding downstream 535116 9297369 ~ 9297578 (+)
LOC113539732 NA non-coding downstream 549467 9311720 ~ 9312791 (+)
nfasca nfasc other upstream 200229 8481095 ~ 8561702 (+)
lrrn2 lrrn2,LOC108425772,LOC107739267,LOC107603068,LOC107675837 other upstream 735002 7974591 ~ 8026929 (+)
cpne5b LOC108436414,LOC108280970,LOC103367600 other upstream 1982573 6663968 ~ 6779358 (+)
tmem167b tmem167b,LOC107592590,LOC107555997 other upstream 2259295 6498060 ~ 6502636 (+)
LOC113539422 rusd4,LOC108255275,LOC106582904,LOC106565791,LOC108435115 other upstream 2468182 6200446 ~ 6293749 (+)
shisa4 shisa4,LOC108254774,LOC107552307 other downstream 773872 9536125 ~ 9551761 (+)
G305515 NA other downstream 1750418 10512671 ~ 10513270 (+)
LOC113539694 LOC105418794,LOC108431938,LOC108412963,LOC105419408,LOC108415465,LOC106522608 other downstream 2002021 10764274 ~ 10773442 (+)
G305727 NA other downstream 2349486 11111739 ~ 11112518 (+)
unm_sa1614 LOC108254916,LOC108424671,LOC107566077,LOC107691346 other downstream 2378983 11141236 ~ 11178473 (+)

Expression


Co-expression Network