G304669


Basic Information

Item Value
gene id G304669
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 8939059 ~ 8939687 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU361111
AACCCAGTTGAAGTTGAAGAAGAAAGTTTAAATACAAACTGAACTATAATAATGTATGTGGATaagaaagatgaaaataaacaacaacgacaacaaaaaAAGGGGTGACAACATGAACAATATACGTGACTGTctcattaaatgtattaaaactcATTTGATTTAAACAATTCCCTGTCTGCAATTAAAAATGTCCTGAGGTGTGTGTATCACTTTGGCAAAGGTCTCCAAACGTGTAGTAACACTGCTCTGAAAAAGTGATCTTGTTGACAGTGTGTCTTAGGTAGCCATGCTTCAGCATGTTGCTGGCGTATTTCCTGGCATCACGTCTATCTTTAAAGCCCTCCACCCGTGAGTACAACCAATCCACAACATCAGCACCTAAAAGAGGAGATGTAGGCACACTATAACAGCATTGGCAATGGTAATTTTTAGCCACATCCTGTCCCTTATTTCTAGGCCTGAGTCCGAGAGCTGCATCACCTTCACAAGGGTGGCCATTTCTGTTTTCCCAGCCATTAGTGGGAGATCATCAAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU361111 True 538 lncRNA 0.40 2 8939059 8939687

Neighbor

gene id symbol gene type direction distance location
nfs1 nfs1,LOC107601922,LOC107559867 coding upstream 12846 8918438 ~ 8926213 (+)
rbm39a rbm39,LOC107727188,LOC107685714,LOC107602070 coding upstream 30528 8901673 ~ 8908531 (+)
rem1 rem1,LOC108255017,LOC108411381,LOC107727768,LOC107655086,LOC105017066,LOC107727184,LOC107554936,LOC107685743 coding upstream 59383 8869019 ~ 8879676 (+)
pnp4a pnp4a,LOC108254835,LOC103041505,LOC108411380,LOC107655042,LOC107727769,LOC107727193,LOC107685744,LOC107559547 coding upstream 119215 8813581 ~ 8819844 (+)
maf1a LOC108254834,LOC108425756,LOC106565397 coding upstream 238415 8693677 ~ 8700644 (+)
syt6b syt6,LOC107727826,LOC107560238,LOC107655078,LOC107749496 coding downstream 288755 9228442 ~ 9237329 (+)
inavab LOC108254772,LOC108410711 coding downstream 376711 9316398 ~ 9335379 (+)
rnpep NA coding downstream 407401 9347088 ~ 9350893 (+)
LOC113539578 LOC108410710,LOC107727873,LOC107560790,LOC107685706,LOC107655073,LOC107749489 coding downstream 419132 9358819 ~ 9379985 (+)
rabif rabif,LOC107601129 coding downstream 467838 9407525 ~ 9409888 (+)
G304600 NA non-coding upstream 176806 8761931 ~ 8762253 (+)
G304599 sox4,LOC108255020,LOC106925895 non-coding upstream 177416 8756598 ~ 8761643 (+)
G304575 NA non-coding upstream 220596 8718224 ~ 8718463 (+)
G304566 NA non-coding upstream 249350 8689493 ~ 8689709 (+)
LOC117599908 NA non-coding upstream 267362 8669638 ~ 8671697 (+)
LOC113539633 NA non-coding downstream 65004 9004691 ~ 9016994 (+)
LOC113539427 NA non-coding downstream 79913 9019600 ~ 9021252 (+)
G304898 NA non-coding downstream 357682 9297369 ~ 9297578 (+)
LOC113539732 NA non-coding downstream 372033 9311720 ~ 9312791 (+)
G304917 NA non-coding downstream 420643 9360330 ~ 9365833 (+)
nfasca nfasc other upstream 377357 8481095 ~ 8561702 (+)
lrrn2 lrrn2,LOC108425772,LOC107739267,LOC107603068,LOC107675837 other upstream 912130 7974591 ~ 8026929 (+)
cpne5b LOC108436414,LOC108280970,LOC103367600 other upstream 2159701 6663968 ~ 6779358 (+)
tmem167b tmem167b,LOC107592590,LOC107555997 other upstream 2436423 6498060 ~ 6502636 (+)
LOC113539422 rusd4,LOC108255275,LOC106582904,LOC106565791,LOC108435115 other upstream 2645310 6200446 ~ 6293749 (+)
shisa4 shisa4,LOC108254774,LOC107552307 other downstream 596438 9536125 ~ 9551761 (+)
G305515 NA other downstream 1572984 10512671 ~ 10513270 (+)
LOC113539694 LOC105418794,LOC108431938,LOC108412963,LOC105419408,LOC108415465,LOC106522608 other downstream 1824587 10764274 ~ 10773442 (+)
G305727 NA other downstream 2172052 11111739 ~ 11112518 (+)
unm_sa1614 LOC108254916,LOC108424671,LOC107566077,LOC107691346 other downstream 2201549 11141236 ~ 11178473 (+)

Expression


Co-expression Network