G304924


Basic Information

Item Value
gene id G304924
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 9395575 ~ 9395926 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU361385
GGTGACTGTAGATGAAACTGTCCCCACCACTTAGTCAAAAGACCCATATCTACAGACCCATATCTTATATTTTGCCTCCTCCTAACAGTCAACAACTCTAACGTGTGTGCAGACTTTCATGAAATTTAAAGCATGCTAAGACCCTCAAAAACACCCTAAAAGAGtattaatgtttgatgtgttaccatggcaacactatttaagatatcaaaaatccttttacaattttacatcaTCCGGGTCCTGACATTATTCTGACCAAGTTTGAGGCGATTCGAATAAATATCAGAGGAGACatgagacacttcctgtttcccttttttcgGCATAAATTTATTGCCTCACCATGGCG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU361385 True 352 lncRNA 0.39 1 9395575 9395926

Neighbor

gene id symbol gene type direction distance location
LOC113539578 LOC108410710,LOC107727873,LOC107560790,LOC107685706,LOC107655073,LOC107749489 coding upstream 15590 9358819 ~ 9379985 (+)
rnpep NA coding upstream 44682 9347088 ~ 9350893 (+)
inavab LOC108254772,LOC108410711 coding upstream 60196 9316398 ~ 9335379 (+)
syt6b syt6,LOC107727826,LOC107560238,LOC107655078,LOC107749496 coding upstream 158246 9228442 ~ 9237329 (+)
nfs1 nfs1,LOC107601922,LOC107559867 coding upstream 469362 8918438 ~ 8926213 (+)
rabif rabif,LOC107601129 coding downstream 11599 9407525 ~ 9409888 (+)
kdm5ba kdm5b,LOC108254769,LOC107600688,LOC107749493 coding downstream 14326 9410252 ~ 9435881 (+)
ipo9 ipo9 coding downstream 41307 9437233 ~ 9488029 (+)
lmod1b lmod1 coding downstream 172125 9568051 ~ 9573289 (+)
LOC113539559 LOC100304472,LOC108440331,LOC107749469,LOC108440330 coding downstream 699604 10095530 ~ 10099522 (+)
G304917 NA non-coding upstream 29742 9360330 ~ 9365833 (+)
LOC113539732 NA non-coding upstream 82784 9311720 ~ 9312791 (+)
G304898 NA non-coding upstream 97997 9297369 ~ 9297578 (+)
LOC113539427 NA non-coding upstream 374323 9019600 ~ 9021252 (+)
LOC113539633 NA non-coding upstream 378581 9004691 ~ 9016994 (+)
G304926 NA non-coding downstream 8125 9404051 ~ 9404267 (+)
G304927 NA non-coding downstream 30117 9426043 ~ 9427519 (+)
G304947 NA non-coding downstream 165459 9561385 ~ 9561606 (+)
G304949 NA non-coding downstream 179496 9575422 ~ 9576781 (+)
LOC113539661 NA non-coding downstream 199202 9595128 ~ 9603865 (+)
nfasca nfasc other upstream 833873 8481095 ~ 8561702 (+)
lrrn2 lrrn2,LOC108425772,LOC107739267,LOC107603068,LOC107675837 other upstream 1368646 7974591 ~ 8026929 (+)
cpne5b LOC108436414,LOC108280970,LOC103367600 other upstream 2616217 6663968 ~ 6779358 (+)
tmem167b tmem167b,LOC107592590,LOC107555997 other upstream 2892939 6498060 ~ 6502636 (+)
LOC113539422 rusd4,LOC108255275,LOC106582904,LOC106565791,LOC108435115 other upstream 3101826 6200446 ~ 6293749 (+)
shisa4 shisa4,LOC108254774,LOC107552307 other downstream 140199 9536125 ~ 9551761 (+)
G305515 NA other downstream 1116745 10512671 ~ 10513270 (+)
LOC113539694 LOC105418794,LOC108431938,LOC108412963,LOC105419408,LOC108415465,LOC106522608 other downstream 1368348 10764274 ~ 10773442 (+)
G305727 NA other downstream 1715813 11111739 ~ 11112518 (+)
unm_sa1614 LOC108254916,LOC108424671,LOC107566077,LOC107691346 other downstream 1745310 11141236 ~ 11178473 (+)

Expression


Co-expression Network