G305210


Basic Information

Item Value
gene id G305210
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 10139288 ~ 10139730 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU361730
TGGAAAAGACAGGGTTACATGAGGTTACTGGACTGCAGAGGCATGATAAAACTGTCAGACTGGTTTCTTCTGTGGCACCAAGTAATCAGAAACTAAAATCTTGATGTGATGAAAGGAAAACATCACACAGCATTTCAGATATAGGAAGTCATCACAGACAATGTAATCAGCTGCCTGACCTGTTCATGATTATATTCTAATTAATTAAACTCATTCTTACTGAAGTCACTAATTTGATCATTAGTGTACATCATATTGGTAGACTAGATAGAATAAATTACAAAGTTGTAGGTTTTTAAGTTTGGGTTAAGATCGTTAGTAAAATCgaaatttttcttaatttttttaattttaaaagagtGTCCTTTTACTGAACCATCAAGTCTAATTAAATGCAGTACATACGCTGCCCAGGAATTATGAACTTCTGTACTACAGATGAG

Function

GO: NA

KEGG:

id description
ko04341 Hedgehog signaling pathway - fly

RNA

RNA id representative length rna type GC content exon number start site end site
TU361730 True 443 lncRNA 0.33 1 10139288 10139730

Neighbor

gene id symbol gene type direction distance location
gnl3l gnl3l coding upstream 402 10102314 ~ 10138886 (+)
LOC113539559 LOC100304472,LOC108440331,LOC107749469,LOC108440330 coding upstream 39766 10095530 ~ 10099522 (+)
lmod1b lmod1 coding upstream 565999 9568051 ~ 9573289 (+)
ipo9 ipo9 coding upstream 651259 9437233 ~ 9488029 (+)
kdm5ba kdm5b,LOC108254769,LOC107600688,LOC107749493 coding upstream 703407 9410252 ~ 9435881 (+)
mon1bb LOC108255044,LOC107564673,LOC107727858,LOC108444170,LOC107691359,LOC107749456,LOC107685668 coding downstream 140790 10280520 ~ 10289815 (+)
ppcs ppcs coding downstream 921278 11061008 ~ 11064101 (+)
cpne1 LOC108254857,LOC108424674,LOC107727818,LOC107691350,LOC107685660,LOC107749446 coding downstream 939330 11079060 ~ 11107165 (+)
rbm12 rbm12,LOC108424674,LOC107749443,LOC107685660,LOC107551121,LOC107727817 coding downstream 939351 11079081 ~ 11086693 (+)
fer1l4 LOC108254855,LOC108424672,LOC107727820,LOC107691347,LOC107749448,LOC107685659,LOC107551122,LOC105912144 coding downstream 967561 11107291 ~ 11140313 (+)
G305232 NA non-coding upstream 66820 10072249 ~ 10072468 (+)
G305228 NA non-coding upstream 70651 10068433 ~ 10068637 (+)
G305218 NA non-coding upstream 89849 10049224 ~ 10049439 (+)
G305214 NA non-coding upstream 104689 10034395 ~ 10034599 (+)
G305188 NA non-coding upstream 125747 10012543 ~ 10013541 (+)
G305368 LOC108255174 non-coding downstream 90802 10230532 ~ 10232192 (+)
G305382 NA non-coding downstream 114160 10253890 ~ 10254274 (+)
G305383 NA non-coding downstream 114865 10254595 ~ 10255330 (+)
G305392 NA non-coding downstream 192013 10331743 ~ 10331947 (+)
G305475 NA non-coding downstream 312471 10452201 ~ 10452404 (+)
shisa4 shisa4,LOC108254774,LOC107552307 other upstream 587527 9536125 ~ 9551761 (+)
nfasca nfasc other upstream 1577586 8481095 ~ 8561702 (+)
lrrn2 lrrn2,LOC108425772,LOC107739267,LOC107603068,LOC107675837 other upstream 2112359 7974591 ~ 8026929 (+)
cpne5b LOC108436414,LOC108280970,LOC103367600 other upstream 3359930 6663968 ~ 6779358 (+)
tmem167b tmem167b,LOC107592590,LOC107555997 other upstream 3636652 6498060 ~ 6502636 (+)
G305515 NA other downstream 372941 10512671 ~ 10513270 (+)
LOC113539694 LOC105418794,LOC108431938,LOC108412963,LOC105419408,LOC108415465,LOC106522608 other downstream 624544 10764274 ~ 10773442 (+)
G305727 NA other downstream 972009 11111739 ~ 11112518 (+)
unm_sa1614 LOC108254916,LOC108424671,LOC107566077,LOC107691346 other downstream 1001506 11141236 ~ 11178473 (+)
dynlrb1 dynlrb1,LOC106565026 other downstream 1075022 11214752 ~ 11221540 (+)

Expression


Co-expression Network