G305383


Basic Information

Item Value
gene id G305383
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 10254595 ~ 10255330 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU361935
aatttttctgcatcgtgtagtgacaatatatttcttattttggcaatatttctgagatgaaagaaagcaaccctaattatattatctacatgagcttcaaaagaaagactagagtcgataatcacaccaaggtcttttactgctgtacatgatgaaacagaaaggccagccagagttattatgtaatcagaaagcttacttctaactgcatgaggtcctagtacaagtacttctgtcttgtcagaattaagtaagagaaagttaataagcatccagtaggcctaaaacagagccttgcgggacaccaaactttaccttaatatgagaagtcaccatttacgtttacaaactgataacgatcagtcaaataagacctgagccaggaaagggccgttcccttaatgcctactacattttccagtctatcgaggagaatagtatgatcagtggtatcaaaagctgcactaaggtcaagcagcacaagcaaggagacacaaccctgatcagaggccagtagtaagtcatttaccactttaaccagtgctgtctctgagctatgatgaggcctaaatcct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU361935 True 575 lncRNA 0.39 2 10254595 10255330

Neighbor

gene id symbol gene type direction distance location
gnl3l gnl3l coding upstream 115709 10102314 ~ 10138886 (+)
LOC113539559 LOC100304472,LOC108440331,LOC107749469,LOC108440330 coding upstream 155073 10095530 ~ 10099522 (+)
lmod1b lmod1 coding upstream 681306 9568051 ~ 9573289 (+)
ipo9 ipo9 coding upstream 766566 9437233 ~ 9488029 (+)
kdm5ba kdm5b,LOC108254769,LOC107600688,LOC107749493 coding upstream 818714 9410252 ~ 9435881 (+)
mon1bb LOC108255044,LOC107564673,LOC107727858,LOC108444170,LOC107691359,LOC107749456,LOC107685668 coding downstream 25190 10280520 ~ 10289815 (+)
ppcs ppcs coding downstream 805678 11061008 ~ 11064101 (+)
cpne1 LOC108254857,LOC108424674,LOC107727818,LOC107691350,LOC107685660,LOC107749446 coding downstream 823730 11079060 ~ 11107165 (+)
rbm12 rbm12,LOC108424674,LOC107749443,LOC107685660,LOC107551121,LOC107727817 coding downstream 823751 11079081 ~ 11086693 (+)
fer1l4 LOC108254855,LOC108424672,LOC107727820,LOC107691347,LOC107749448,LOC107685659,LOC107551122,LOC105912144 coding downstream 851961 11107291 ~ 11140313 (+)
G305382 NA non-coding upstream 321 10253890 ~ 10254274 (+)
G305368 LOC108255174 non-coding upstream 22403 10230532 ~ 10232192 (+)
G305210 NA non-coding upstream 114865 10139288 ~ 10139730 (+)
G305232 NA non-coding upstream 182127 10072249 ~ 10072468 (+)
G305228 NA non-coding upstream 185958 10068433 ~ 10068637 (+)
G305392 NA non-coding downstream 76413 10331743 ~ 10331947 (+)
G305475 NA non-coding downstream 196871 10452201 ~ 10452404 (+)
G305496 NA non-coding downstream 224370 10479700 ~ 10479918 (+)
LOC113539715 NA non-coding downstream 230124 10485454 ~ 10511435 (+)
G305517 NA non-coding downstream 261954 10517284 ~ 10517562 (+)
shisa4 shisa4,LOC108254774,LOC107552307 other upstream 702834 9536125 ~ 9551761 (+)
nfasca nfasc other upstream 1692893 8481095 ~ 8561702 (+)
lrrn2 lrrn2,LOC108425772,LOC107739267,LOC107603068,LOC107675837 other upstream 2227666 7974591 ~ 8026929 (+)
cpne5b LOC108436414,LOC108280970,LOC103367600 other upstream 3475237 6663968 ~ 6779358 (+)
tmem167b tmem167b,LOC107592590,LOC107555997 other upstream 3751959 6498060 ~ 6502636 (+)
G305515 NA other downstream 257341 10512671 ~ 10513270 (+)
LOC113539694 LOC105418794,LOC108431938,LOC108412963,LOC105419408,LOC108415465,LOC106522608 other downstream 508944 10764274 ~ 10773442 (+)
G305727 NA other downstream 856409 11111739 ~ 11112518 (+)
unm_sa1614 LOC108254916,LOC108424671,LOC107566077,LOC107691346 other downstream 885906 11141236 ~ 11178473 (+)
dynlrb1 dynlrb1,LOC106565026 other downstream 959422 11214752 ~ 11221540 (+)

Expression


Co-expression Network