LOC113539715


Basic Information

Item Value
gene id LOC113539715
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 10485454 ~ 10511435 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU362106
TAAGCAATGCCCCGGAATCTGGTTTGCCAACCGCGATAAAACCtcacatgaagaagaagaagaaataattcAACCCGCATAGCCGTTTCTTTCTATTGCATCTCGTAATGGCTGCTGCTCAGGCTGCGTTTTCGTCATCCTCGTCCACTTAAGCTTCAGTGCTACAAACTTGGATGGTGCAGGTTCAGATGAAGACAGCCAGAGTGTTGGTGAAAGGGATCAAGATTCACCATCTTCAGAACCAGAGTCACCAAGCAATTCTTCTGGCCCAGTAGGACCTGATGATATTTCGCAGTGCAGAGCAGAGGGTTCTCTCCAACCGTCAGAGAGATTATTCTGCTCCCATAGGACCTGATGACTGAAGTTCCTCACAGATGACTCAGAGAAaaatttttaagtgttttttattgTACATACGATAACATGCCCCTGGACGGTCTGGC
>TU362107
ACTTCACAGAGCCTCCTTTTGGTCATCTAAACCACGCTCGGCGAGGAGGCTCACACGGACTGTTGATCACGGTGTATTAACCAACTTGGCCTTCTCCTTTGGATTACTTAATATACGATCACTTTCCACTAAAGGACCACTGGTGTACGATCTGCTGTCTGACTCTACAAACTTGGATGGTGCAGGTTCAGATGAAGACAGCCAGAGTGTTGGTGAAAGGGATCAAGATTCACCATCTTCAGAACCAGAGTCACCAAGCAATTCTTCTGGCCCAGTAGGACCTGATGATATTTCGCAGTGCAGAGCAGAGGGTTCTCTCCAACCGTCAGAGAGATTATTCTGCTCCCATAGGACCTGATGACTGAAGTTCCTCACAGATGACTCAGAGAAaaatttttaagtgttttttattgTACATACGATAACATGCCCCTGGACGGTCTGGC
>TU362108
TTGCCACGTGACATGACAGCATTGGATAgagaaattagttaatttacaaAAGACCGAACCACTCGAAAGACTCGtgaactaatcaattctctttccggcTCAGACTGCATTGGTTATGGGGCTGTCACGTGATGAACGAACAAATCAAACCCAAAGACTGGACTAAAGATCCACagCTACAAACTTGGATGGTGCAGGTTCAGATGAAGACAGCCAGAGTGTTGGTGAAAGGGATCAAGATTCACCATCTTCAGAACCAGAGTCACCAAGCAATTCTTCTGGCCCAGTAGGACCTGATGATATTTCGCAGTGCAGAGCAGAGGGTTCTCTCCAACCGTCAGAGAGATTATTCTGCTCCCATAGGACCTGATGACTGAAGTTCCTCACAGATGACTCAGAGAAaaatttttaagtgttttttattgTACATACGATAACATGCCCCTGGACGGTCTGGC
>XR_003403958.2
gtgatttaaaCGACATGGGGTGGAGAGTGACGTCACTGCCCCCAGTAATACCTGTTATTTCCAAGTCACGTAAAAACATACAGTGATCATTTTAGCTGCACAAACCAGCACAATTTGAGCACAAACGAATGCCACctgtttggggtgatttaaaCGACATGGGGTGGAGAGTGATGTCACTGCTCCCAAAATTCTTCTTGTTATATTTCGGGAAGGAAAGTAATTACAgggtttgttttaatggcacaAACCGGCACAAATCGAGCACAAACGAACGGCACCGATTTGGACGACATGGGATGGAGAGTGACgtcacacagccaaaaaaagaatgtttaatatcttgaaCGCCAAACCAGCACAAACGTTTGTTTTTGCggcacaaatcagcacaaacacagcacaaacgAATGGTATAGTTTTGgtgactatttatttatatggggTGCCAACTTCACAGAGCCTCCTTTTGGTCATCTAAACCACGCTCGGCGAGGAGGCTCACACGGACTGTTGATCACGGTGTATTAACCAACTTGGCCTTCTCCTTTGGATTACTTAATATACGATCACTTTCCACTAAAGGACCACTGGTGTACGATCTGCTGTCTGACTCTACAAACTTGGATGGTGCAGGTTCAGATGAAGACAGCCAGAGTGTTGGTGAAAGGGATCAAGATTCACCATCTTCAGAACCAGAGTCACCAAGCAATTCTTCTGGCCCAGTAGGACCTGATGATATTTCGCAGTGCAGAGCAGAGGGTTCTCTCCAACCGTCAGAGAGATTATTCTGCTCCCATAGGACCTGATGACTGAAGTTCCTCACAGATGACTCAGAGAAaaatttttaagtgttttttattgTACATACGATAACATGCCCCTGGACGGTCTGGCGGATGTATCTGACGTGTTAATAAATGGTTTATTGGTA
>XR_004580263.1
GGTAGAAGATGTAAAACCAAGGACAGTAGTAATATGTACTGACTCTCATGCAGCATTATCAAGCCTTGCAAGTGGATTACATTCAAGGCAAGACATTATATATATGAGATTCTTGAAAGTTTGTTAAGAATAAATAATGCAAGCCTAATAACGTTTTTGTGGGTACCAGCTCATGTGGGAGTGGAGGGTAATGAAACTGTTGACAAATTAGCTAAGCAATGCCCCGGAATCTGGTTTGCCAACCGCGATAAAACCtcacatgaagaagaagaagaaataattcAACCCGCATAGCCGTTTCTTTCTATTGCATCTCGTAATGGCTGCTGCTCAGGCTGCGTTTTCGTCATCCTCGTCCACTTAAGCTTCAGTGAGCCTCCTTTTGGTCATCTAAACCACGCTCGGCGAGGAGGCTCACACGGACTGTTGATCACGGTGTATTAACCAACTTGGCCTTCTCCTTTGGATTACTTAATATACGATCACTTTCCACTAAAGGACCACTGGTGTACGATCTGCTGTCTGACTCTACAAACTTGGATGGTGCAGGTTCAGATGAAGACAGCCAGAGTGTTGGTGAAAGGGATCAAGATTCACCATCTTCAGAACCAGAGTCACCAAGCAATTCTTCTGGCCCAGTAGGACCTGATGATATTTCGCAGTGCAGAGCAGAGGGTTCTCTCCAACCGTCAGAGAGATTATTCTGCTCCCATAGGACCTGATGACTGAAGTTCCTCACAGATGACTCAGAGAAaaatttttaagtgttttttattgTACATACGATAACATGCCCCTGGACGGTCTGGCGGATGTATCTGACGTGTTAATAAATGGTTTATTGGTA
>XR_004580264.1
CAAGGACAGTAGTAATATGTACTGACTCTCATGCAGCATTATCAAGCCTTGCAAGTGGATTACATTCAAGGCAAGACATTATATATATGAGATTCTTGAAAGTTTGTTAAGAATAAATAATGCAAGCCTAATAACGTTTTTGTGGGTACCAGCTCATGTGGGAGTGGAGGGTAATGAAACTGTTGACAAATTAGCTAAGCAATGCCCCGGAATCTGGTTTGCCAACCGCGATAAAACCtcacatgaagaagaagaagaaataattcAACCCGCATAGCCGTTTCTTTCTATTGCATCTCGTAATGGCTGCTGCTCAGGCTGCGTTTTCGTCATCCTCGTCCACTTAAGCTTCAGTGCTACAAACTTGGATGGTGCAGGTTCAGATGAAGACAGCCAGAGTGTTGGTGAAAGGGATCAAGATTCACCATCTTCAGAACCAGAGTCACCAAGCAATTCTTCTGGCCCAGTAGGACCTGATGATATTTCGCAGTGCAGAGCAGAGGGTTCTCTCCAACCGTCAGAGAGATTATTCTGCTCCCATAGGACCTGATGACTGAAGTTCCTCACAGATGACTCAGAGAAaaatttttaagtgttttttattgTACATACGATAACATGCCCCTGGACGGTCTGGCGGATGTATCTGACGTGTTAATAAATGGTTTATTGGTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU362106 False 443 lncRNA 0.46 4 10490763 10511398
TU362107 False 446 lncRNA 0.46 4 10502747 10511398
TU362108 False 458 lncRNA 0.45 4 10485454 10511398
XR_003403958.2 True 934 lncRNA 0.44 4 10502296 10511435
XR_004580263.1 False 847 lncRNA 0.43 5 10490551 10511435
XR_004580264.1 False 675 lncRNA 0.43 4 10490568 10511435

Neighbor

gene id symbol gene type direction distance location
mon1bb LOC108255044,LOC107564673,LOC107727858,LOC108444170,LOC107691359,LOC107749456,LOC107685668 coding upstream 195639 10280520 ~ 10289815 (+)
gnl3l gnl3l coding upstream 346568 10102314 ~ 10138886 (+)
LOC113539559 LOC100304472,LOC108440331,LOC107749469,LOC108440330 coding upstream 385932 10095530 ~ 10099522 (+)
lmod1b lmod1 coding upstream 912165 9568051 ~ 9573289 (+)
ipo9 ipo9 coding upstream 997425 9437233 ~ 9488029 (+)
ppcs ppcs coding downstream 549573 11061008 ~ 11064101 (+)
cpne1 LOC108254857,LOC108424674,LOC107727818,LOC107691350,LOC107685660,LOC107749446 coding downstream 567625 11079060 ~ 11107165 (+)
rbm12 rbm12,LOC108424674,LOC107749443,LOC107685660,LOC107551121,LOC107727817 coding downstream 567646 11079081 ~ 11086693 (+)
fer1l4 LOC108254855,LOC108424672,LOC107727820,LOC107691347,LOC107749448,LOC107685659,LOC107551122,LOC105912144 coding downstream 595856 11107291 ~ 11140313 (+)
map1lc3a map1lc3a,LOC107551126 coding downstream 712713 11224148 ~ 11235261 (+)
G305496 NA non-coding upstream 5536 10479700 ~ 10479918 (+)
G305475 NA non-coding upstream 33050 10452201 ~ 10452404 (+)
G305392 NA non-coding upstream 153507 10331743 ~ 10331947 (+)
G305383 NA non-coding upstream 230124 10254595 ~ 10255330 (+)
G305382 NA non-coding upstream 231180 10253890 ~ 10254274 (+)
G305517 NA non-coding downstream 5849 10517284 ~ 10517562 (+)
G305522 NA non-coding downstream 12665 10524100 ~ 10524549 (+)
G305568 NA non-coding downstream 29876 10541311 ~ 10541532 (+)
G305583 LOC107676803 non-coding downstream 130831 10642266 ~ 10664214 (+)
G305584 NA non-coding downstream 155762 10667197 ~ 10672574 (+)
shisa4 shisa4,LOC108254774,LOC107552307 other upstream 933693 9536125 ~ 9551761 (+)
nfasca nfasc other upstream 1923752 8481095 ~ 8561702 (+)
lrrn2 lrrn2,LOC108425772,LOC107739267,LOC107603068,LOC107675837 other upstream 2458525 7974591 ~ 8026929 (+)
cpne5b LOC108436414,LOC108280970,LOC103367600 other upstream 3706096 6663968 ~ 6779358 (+)
tmem167b tmem167b,LOC107592590,LOC107555997 other upstream 3982818 6498060 ~ 6502636 (+)
G305515 NA other downstream 1236 10512671 ~ 10513270 (+)
LOC113539694 LOC105418794,LOC108431938,LOC108412963,LOC105419408,LOC108415465,LOC106522608 other downstream 252839 10764274 ~ 10773442 (+)
G305727 NA other downstream 600304 11111739 ~ 11112518 (+)
unm_sa1614 LOC108254916,LOC108424671,LOC107566077,LOC107691346 other downstream 629801 11141236 ~ 11178473 (+)
dynlrb1 dynlrb1,LOC106565026 other downstream 703317 11214752 ~ 11221540 (+)

Expression


Co-expression Network