G305522


Basic Information

Item Value
gene id G305522
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 10524100 ~ 10524549 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU362127
GGTCTCATCTATACAACGACTTCAGTTGGTTCAAAATGAGGCTGCCCGTTTGCTCACAGGCAGTCGCAAATGGGTACATATTACACCTATCTTAAGCTCGCTGCACTGGTTACCTTTGCAGTACCGTATTGAGCTTAaaattttgctttttgtgtACAAGGCTGTTAATTGTCTTGCTCCTCAATATCTTTCAGAGTTGCTTACTGTCCACAATCCTGTCAGATCACTCAGATCTCAGACTACACATATGTTGTGGATTCCCAGAACAAGACTAAAATGTAGGGGAGATAGAGCTTTCTCTGTTGCTGGTCCCAAACTATGGAACACTTTGCCTCTATCTATCAGAACTGCTTCTACAGTGTCtgaatttaaatgtctgttaaaaACTCATCTTTTCTTCTGTGCTTTTAATGATAGGTGATTGGGTTGTTTTAAGGTTATATGGATTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU362127 True 450 lncRNA 0.40 1 10524100 10524549

Neighbor

gene id symbol gene type direction distance location
mon1bb LOC108255044,LOC107564673,LOC107727858,LOC108444170,LOC107691359,LOC107749456,LOC107685668 coding upstream 234285 10280520 ~ 10289815 (+)
gnl3l gnl3l coding upstream 385214 10102314 ~ 10138886 (+)
LOC113539559 LOC100304472,LOC108440331,LOC107749469,LOC108440330 coding upstream 424578 10095530 ~ 10099522 (+)
lmod1b lmod1 coding upstream 950811 9568051 ~ 9573289 (+)
ipo9 ipo9 coding upstream 1036071 9437233 ~ 9488029 (+)
ppcs ppcs coding downstream 536459 11061008 ~ 11064101 (+)
cpne1 LOC108254857,LOC108424674,LOC107727818,LOC107691350,LOC107685660,LOC107749446 coding downstream 554511 11079060 ~ 11107165 (+)
rbm12 rbm12,LOC108424674,LOC107749443,LOC107685660,LOC107551121,LOC107727817 coding downstream 554532 11079081 ~ 11086693 (+)
fer1l4 LOC108254855,LOC108424672,LOC107727820,LOC107691347,LOC107749448,LOC107685659,LOC107551122,LOC105912144 coding downstream 582742 11107291 ~ 11140313 (+)
map1lc3a map1lc3a,LOC107551126 coding downstream 699599 11224148 ~ 11235261 (+)
G305517 NA non-coding upstream 6538 10517284 ~ 10517562 (+)
LOC113539715 NA non-coding upstream 12665 10485454 ~ 10511435 (+)
G305496 NA non-coding upstream 44182 10479700 ~ 10479918 (+)
G305475 NA non-coding upstream 71696 10452201 ~ 10452404 (+)
G305392 NA non-coding upstream 192153 10331743 ~ 10331947 (+)
G305568 NA non-coding downstream 16762 10541311 ~ 10541532 (+)
G305583 LOC107676803 non-coding downstream 117717 10642266 ~ 10664214 (+)
G305584 NA non-coding downstream 142648 10667197 ~ 10672574 (+)
G305642 NA non-coding downstream 273420 10797969 ~ 10800231 (+)
LOC113538022 NA non-coding downstream 549213 11073762 ~ 11075590 (+)
G305515 NA other upstream 10830 10512671 ~ 10513270 (+)
shisa4 shisa4,LOC108254774,LOC107552307 other upstream 972339 9536125 ~ 9551761 (+)
nfasca nfasc other upstream 1962398 8481095 ~ 8561702 (+)
lrrn2 lrrn2,LOC108425772,LOC107739267,LOC107603068,LOC107675837 other upstream 2497171 7974591 ~ 8026929 (+)
cpne5b LOC108436414,LOC108280970,LOC103367600 other upstream 3744742 6663968 ~ 6779358 (+)
LOC113539694 LOC105418794,LOC108431938,LOC108412963,LOC105419408,LOC108415465,LOC106522608 other downstream 239725 10764274 ~ 10773442 (+)
G305727 NA other downstream 587190 11111739 ~ 11112518 (+)
unm_sa1614 LOC108254916,LOC108424671,LOC107566077,LOC107691346 other downstream 616687 11141236 ~ 11178473 (+)
dynlrb1 dynlrb1,LOC106565026 other downstream 690203 11214752 ~ 11221540 (+)
G305863 iqsec1,iqsec1b other downstream 789635 11314184 ~ 11315436 (+)

Expression


Co-expression Network