G305568


Basic Information

Item Value
gene id G305568
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 10541311 ~ 10541532 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU362178
cttccaggccttttggtgttgctgagctcaccagttaatttctttctttttgagaatgtaccaaattgttgatttggccactcctaaagtttctgctatctgtctgttttgttttttcagcctaatgatggcctcctttgcttgcatcgacacctctttggactgcatagtgagagttcccatgtaCAGCTactaaatgcaaattcaacacttggaatcaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU362178 True 222 lncRNA 0.41 1 10541311 10541532

Neighbor

gene id symbol gene type direction distance location
mon1bb LOC108255044,LOC107564673,LOC107727858,LOC108444170,LOC107691359,LOC107749456,LOC107685668 coding upstream 251496 10280520 ~ 10289815 (+)
gnl3l gnl3l coding upstream 402425 10102314 ~ 10138886 (+)
LOC113539559 LOC100304472,LOC108440331,LOC107749469,LOC108440330 coding upstream 441789 10095530 ~ 10099522 (+)
lmod1b lmod1 coding upstream 968022 9568051 ~ 9573289 (+)
ipo9 ipo9 coding upstream 1053282 9437233 ~ 9488029 (+)
ppcs ppcs coding downstream 519476 11061008 ~ 11064101 (+)
cpne1 LOC108254857,LOC108424674,LOC107727818,LOC107691350,LOC107685660,LOC107749446 coding downstream 537528 11079060 ~ 11107165 (+)
rbm12 rbm12,LOC108424674,LOC107749443,LOC107685660,LOC107551121,LOC107727817 coding downstream 537549 11079081 ~ 11086693 (+)
fer1l4 LOC108254855,LOC108424672,LOC107727820,LOC107691347,LOC107749448,LOC107685659,LOC107551122,LOC105912144 coding downstream 565759 11107291 ~ 11140313 (+)
map1lc3a map1lc3a,LOC107551126 coding downstream 682616 11224148 ~ 11235261 (+)
G305522 NA non-coding upstream 16762 10524100 ~ 10524549 (+)
G305517 NA non-coding upstream 23749 10517284 ~ 10517562 (+)
LOC113539715 NA non-coding upstream 29876 10485454 ~ 10511435 (+)
G305496 NA non-coding upstream 61393 10479700 ~ 10479918 (+)
G305475 NA non-coding upstream 88907 10452201 ~ 10452404 (+)
G305583 LOC107676803 non-coding downstream 100734 10642266 ~ 10664214 (+)
G305584 NA non-coding downstream 125665 10667197 ~ 10672574 (+)
G305642 NA non-coding downstream 256437 10797969 ~ 10800231 (+)
LOC113538022 NA non-coding downstream 532230 11073762 ~ 11075590 (+)
G305734 NA non-coding downstream 587756 11129288 ~ 11129487 (+)
G305515 NA other upstream 28041 10512671 ~ 10513270 (+)
shisa4 shisa4,LOC108254774,LOC107552307 other upstream 989550 9536125 ~ 9551761 (+)
nfasca nfasc other upstream 1979609 8481095 ~ 8561702 (+)
lrrn2 lrrn2,LOC108425772,LOC107739267,LOC107603068,LOC107675837 other upstream 2514382 7974591 ~ 8026929 (+)
cpne5b LOC108436414,LOC108280970,LOC103367600 other upstream 3761953 6663968 ~ 6779358 (+)
LOC113539694 LOC105418794,LOC108431938,LOC108412963,LOC105419408,LOC108415465,LOC106522608 other downstream 222742 10764274 ~ 10773442 (+)
G305727 NA other downstream 570207 11111739 ~ 11112518 (+)
unm_sa1614 LOC108254916,LOC108424671,LOC107566077,LOC107691346 other downstream 599704 11141236 ~ 11178473 (+)
dynlrb1 dynlrb1,LOC106565026 other downstream 673220 11214752 ~ 11221540 (+)
G305863 iqsec1,iqsec1b other downstream 772652 11314184 ~ 11315436 (+)

Expression


Co-expression Network