G305849


Basic Information

Item Value
gene id G305849
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 11273585 ~ 11275616 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU362514
TTCACTTAataatagttatttattttaaaatatggagATCAGTATTTACAAAGATACATTTTGATTAGATCAAGGTGGTAGATTGCATAtacagttaaattaaattaaatgaacctTTAGTAATAAAAGGAGTGAAGGATGGCGGAGCAGGACAAAACAAAAGGCTGTCAATATGACCTAAAACTATCATCAAGAAAGTGCCTCAACCAACATCCAACCAGAATGCAGTACAGTTACATCTAAAGATATAAGTGCCACATCAGTACGTTCTTTCAAGAGGGTGGGAGCAGATATACGCCCGCTTCTCCAGGACTTCCTGGGCAATCTTCTTAATGTTGGCGTCATTGTTCTCTGGGGAATTTTTTGTAGCTGAGTCATCCAGTAGTTATTTTTGAAGTAAGCCTCCTTGCAGAAGGTGTTTGCAAGCAGCACCTACACCAGTAAAAAACAATGTGTTACCgtataaaataacattagcattaactgTGTTCCATAACAAAGACCAAAGCATAAGTATGAAGAATATAgctcttttaattaaaaaaaaaatgtgtaattgcaGTAATTAATATCCAGTATAAACTAAATCAACACAGACAATAAGAACTATCAGATGAACTGACAGTTCAGTATGGAGTCATTATCATTTTCCTTAATAAGCTTACTATTTCACAGAAATGCACCCccatttcaacattaaaatgaCTCCATTCCATTTTAATCAATAACAGACCTCTTTTTACTCTCTACTTCCTTTCATTTCGTTTTTGGCTTGAGGTGTacatcacacactttacacaagTGGCCACTTTTAGCACAAGAGAAGGAGGGTGTGGTGGGAACCGCTTTTTCCAGAACAGAATGCCTTTGGCCTTGGCAGGATAACGTTAGTGATTTCATTTTGAACTCTGTACAGAGTCATATTGGCTTCTTAACTAGCTGGCTGACTACAAATGATAGTTGAGCTATGCCAGCTGTCACGTACAGACATCACAGTTAGCTACATGAGACCAAACAGCTTCTATTTCTCAGgttatttttggctgttttgaaAAGGAAATCTCTTCTTATTACAATGTGTTCTTAGTAAGTGCCCCTGATGTGGTCACTGACTCCATCCATCGGTCCTCTGAACCTCACTAACAGTGTATTCACACTGCAGCAAAGCAATGCACTGTTGGTTGCTTTAGAGGAGTGTCACTAAAAACAgtatgtgtactgtatgtatagcTGTCCAGAGTGATGTGCATGAAGTCTAGATCTCCAGTGAAATGGAGGTTAAAACAGGCTGGctttacttcagttttttttattttaaccactGTAGTTATTTCCTGCTTGGTTTGTGGTCTTTTGTGAGGCATACAAGGTTATAAAAAATGTCTTTCAGTCATTATGCTGTTGTAATCATGTTTTAGTTGCTACAGAGCTGCTGCTTGTCTTTTGCATTTTGCACTGCGCTGACTTCAGCACAGTGACGATGGGCGTGGCTTACGACAAGACTCGCACAACAGAGAACAATATGATTGTGGCTGCTGCCCGATGAGATTCGCCTTTCGTTTGCACAGAATTGAGAAATTCTTGTGTTTTTCGCTCTGTATAGGACTTGCCTGTTTCAATATCAACATAATGAGggatggaatttaaaaaaacgcTTCACATGGTTTGCGTGCCTCTTACTCGAAACCTTGTGGTGTACTGTTTTCGTGTGAAGTTGTAGTTTGTGGTGTTTGGTTGAGAGGCTGTTGGATAATTGATTGAAATGCTGTTGGCTGTTTGGTTAAAAGGCTGTCAGGAGTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU362514 True 1800 lncRNA 0.39 2 11273585 11275616

Neighbor

gene id symbol gene type direction distance location
cfap92 NA coding upstream 106 11256014 ~ 11273479 (+)
map1lc3a map1lc3a,LOC107551126 coding upstream 38324 11224148 ~ 11235261 (+)
fer1l4 LOC108254855,LOC108424672,LOC107727820,LOC107691347,LOC107749448,LOC107685659,LOC107551122,LOC105912144 coding upstream 133272 11107291 ~ 11140313 (+)
cpne1 LOC108254857,LOC108424674,LOC107727818,LOC107691350,LOC107685660,LOC107749446 coding upstream 166420 11079060 ~ 11107165 (+)
rbm12 rbm12,LOC108424674,LOC107749443,LOC107685660,LOC107551121,LOC107727817 coding upstream 186892 11079081 ~ 11086693 (+)
hdac11 hdac11,LOC107749433,LOC107727860 coding downstream 268123 11543739 ~ 11583449 (+)
fbln2 fbln2,LOC108254974 coding downstream 333306 11608922 ~ 11671459 (+)
barx1 barx1,LOC107727794,LOC107685643,LOC107691398 coding downstream 518395 11794011 ~ 11797434 (+)
alpl alpl,LOC107691326,LOC107685635 coding downstream 792008 12067624 ~ 12096756 (+)
nmur3 LOC108281099,LOC108439501 coding downstream 901474 12177090 ~ 12185144 (+)
G305735 NA non-coding upstream 138861 11134515 ~ 11134724 (+)
G305734 NA non-coding upstream 144098 11129288 ~ 11129487 (+)
LOC113538022 NA non-coding upstream 197995 11073762 ~ 11075590 (+)
G305642 NA non-coding upstream 473354 10797969 ~ 10800231 (+)
G305584 NA non-coding upstream 601011 10667197 ~ 10672574 (+)
G305833 NA non-coding downstream 22706 11298322 ~ 11300713 (+)
G305834 NA non-coding downstream 27674 11303290 ~ 11304633 (+)
G305865 NA non-coding downstream 35254 11310870 ~ 11312417 (+)
G305864 iqsec1,LOC107551128,LOC107749434 non-coding downstream 41571 11317187 ~ 11317500 (+)
LOC117599893 NA non-coding downstream 77260 11352876 ~ 11355077 (+)
dynlrb1 dynlrb1,LOC106565026 other upstream 52045 11214752 ~ 11221540 (+)
unm_sa1614 LOC108254916,LOC108424671,LOC107566077,LOC107691346 other upstream 95112 11141236 ~ 11178473 (+)
G305727 NA other upstream 161067 11111739 ~ 11112518 (+)
LOC113539694 LOC105418794,LOC108431938,LOC108412963,LOC105419408,LOC108415465,LOC106522608 other upstream 500143 10764274 ~ 10773442 (+)
G305515 NA other upstream 760315 10512671 ~ 10513270 (+)
G305863 iqsec1,iqsec1b other downstream 38568 11314184 ~ 11315436 (+)
G305869 NA other downstream 49988 11325604 ~ 11326360 (+)
G305955 iqsec1 other downstream 205053 11480669 ~ 11481100 (+)
G306103 NA other downstream 239443 11515059 ~ 11515813 (+)
G306480 tuba1c,LOC103148207,LOC106920718,LOC102311436,LOC101065103 other downstream 1181985 12457601 ~ 12462536 (+)

Expression


Co-expression Network