G305864 (iqsec1,LOC107551128,LOC107749434)


Basic Information

Item Value
gene id G305864
gene name iqsec1,LOC107551128,LOC107749434
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 11317187 ~ 11317500 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU362532
TGTCCTGGAGATCAGTGGAGAGCTCATAGCTCTCGGAGAGCGAGCGTGAGCGTTTGATGGCCTCCTCCTCAGCCTGTTTGCGGAGGATAGATTGTGAGTGTTGGAGTTTGGGGCGACGTGGCCGCTGCCGGACCTCGTGTGTGTAAAGCGACGGTGCCTCAAAGTGCTCAGTGCTGATGATGGAGCTGCGCGTCACCGGCCCGCGAGAGTATCCGCTTTCCAGAGACGCACCTGCCTCACAGCCAGCACCATCACCTTCCACACTGCAGGGAGAAAGAGTGGGTTTCACTTAAGgcacttttattaatttaaaa

Function

symbol description
iqsec1 Predicted to enable protein kinase binding activity. Predicted to be involved in several processes, including positive regulation of focal adhesion disassembly; positive regulation of keratinocyte migration; and regulation of postsynaptic neurotransmitter receptor internalization. Located in nucleolus. Implicated in intellectual developmental disorder with short stature and behavioral abnormalities.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU362532 True 314 lncRNA 0.56 1 11317187 11317500

Neighbor

gene id symbol gene type direction distance location
cfap92 NA coding upstream 43708 11256014 ~ 11273479 (+)
map1lc3a map1lc3a,LOC107551126 coding upstream 81926 11224148 ~ 11235261 (+)
fer1l4 LOC108254855,LOC108424672,LOC107727820,LOC107691347,LOC107749448,LOC107685659,LOC107551122,LOC105912144 coding upstream 176874 11107291 ~ 11140313 (+)
cpne1 LOC108254857,LOC108424674,LOC107727818,LOC107691350,LOC107685660,LOC107749446 coding upstream 210022 11079060 ~ 11107165 (+)
hdac11 hdac11,LOC107749433,LOC107727860 coding downstream 226239 11543739 ~ 11583449 (+)
fbln2 fbln2,LOC108254974 coding downstream 291422 11608922 ~ 11671459 (+)
barx1 barx1,LOC107727794,LOC107685643,LOC107691398 coding downstream 476511 11794011 ~ 11797434 (+)
alpl alpl,LOC107691326,LOC107685635 coding downstream 750124 12067624 ~ 12096756 (+)
nmur3 LOC108281099,LOC108439501 coding downstream 859590 12177090 ~ 12185144 (+)
G305865 NA non-coding upstream 4770 11310870 ~ 11312417 (+)
G305834 NA non-coding upstream 12554 11303290 ~ 11304633 (+)
G305833 NA non-coding upstream 16474 11298322 ~ 11300713 (+)
G305849 NA non-coding upstream 41571 11273585 ~ 11275616 (+)
G305735 NA non-coding upstream 182463 11134515 ~ 11134724 (+)
LOC117599893 NA non-coding downstream 35376 11352876 ~ 11355077 (+)
G305903 NA non-coding downstream 92031 11409531 ~ 11410296 (+)
G305920 NA non-coding downstream 112319 11429819 ~ 11430045 (+)
G306106 NA non-coding downstream 225433 11542933 ~ 11543138 (+)
G306145 NA non-coding downstream 330800 11648300 ~ 11661421 (+)
G305863 iqsec1,iqsec1b other upstream 1751 11314184 ~ 11315436 (+)
dynlrb1 dynlrb1,LOC106565026 other upstream 95647 11214752 ~ 11221540 (+)
unm_sa1614 LOC108254916,LOC108424671,LOC107566077,LOC107691346 other upstream 138714 11141236 ~ 11178473 (+)
G305727 NA other upstream 204669 11111739 ~ 11112518 (+)
LOC113539694 LOC105418794,LOC108431938,LOC108412963,LOC105419408,LOC108415465,LOC106522608 other upstream 543745 10764274 ~ 10773442 (+)
G305869 NA other downstream 8104 11325604 ~ 11326360 (+)
G305955 iqsec1 other downstream 163169 11480669 ~ 11481100 (+)
G306103 NA other downstream 197559 11515059 ~ 11515813 (+)
G306480 tuba1c,LOC103148207,LOC106920718,LOC102311436,LOC101065103 other downstream 1140101 12457601 ~ 12462536 (+)
ippk ippk,LOC107755999,LOC106566243 other downstream 2356854 13674354 ~ 13692912 (+)

Expression


Co-expression Network