G305920


Basic Information

Item Value
gene id G305920
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 11429819 ~ 11430045 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU362588
gcctaatcctggtcaggattgcgCTGGGTCTGGTGCCTAGCAGGAACTCTGAGCATTAAACTCTccttaaatgcaaatttaatgTCTAATAGCCAGTTTTCTGCCAACTCCAGGAAAAACTATGTTCTACCTGTCCAAGCCTCCTCCTGAGACATCTGCCTGCCTCTCTTCTGGTTACTATTTCcaacacattaatacaaaacTGGAAAAAGTTTGTCTATTGACAg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU362588 True 227 lncRNA 0.43 1 11429819 11430045

Neighbor

gene id symbol gene type direction distance location
cfap92 NA coding upstream 156340 11256014 ~ 11273479 (+)
map1lc3a map1lc3a,LOC107551126 coding upstream 194558 11224148 ~ 11235261 (+)
fer1l4 LOC108254855,LOC108424672,LOC107727820,LOC107691347,LOC107749448,LOC107685659,LOC107551122,LOC105912144 coding upstream 289506 11107291 ~ 11140313 (+)
cpne1 LOC108254857,LOC108424674,LOC107727818,LOC107691350,LOC107685660,LOC107749446 coding upstream 322654 11079060 ~ 11107165 (+)
hdac11 hdac11,LOC107749433,LOC107727860 coding downstream 113694 11543739 ~ 11583449 (+)
fbln2 fbln2,LOC108254974 coding downstream 178877 11608922 ~ 11671459 (+)
barx1 barx1,LOC107727794,LOC107685643,LOC107691398 coding downstream 363966 11794011 ~ 11797434 (+)
alpl alpl,LOC107691326,LOC107685635 coding downstream 637579 12067624 ~ 12096756 (+)
nmur3 LOC108281099,LOC108439501 coding downstream 747045 12177090 ~ 12185144 (+)
G305903 NA non-coding upstream 19523 11409531 ~ 11410296 (+)
LOC117599893 NA non-coding upstream 74742 11352876 ~ 11355077 (+)
G305864 iqsec1,LOC107551128,LOC107749434 non-coding upstream 112319 11317187 ~ 11317500 (+)
G305865 NA non-coding upstream 117402 11310870 ~ 11312417 (+)
G305834 NA non-coding upstream 125186 11303290 ~ 11304633 (+)
G306106 NA non-coding downstream 112888 11542933 ~ 11543138 (+)
G306145 NA non-coding downstream 218255 11648300 ~ 11661421 (+)
G306199 NA non-coding downstream 322180 11752225 ~ 11754031 (+)
LOC113537887 NA non-coding downstream 407293 11837338 ~ 11843605 (+)
G306284 NA non-coding downstream 492424 11922469 ~ 11922676 (+)
G305869 NA other upstream 103459 11325604 ~ 11326360 (+)
G305863 iqsec1,iqsec1b other upstream 114383 11314184 ~ 11315436 (+)
dynlrb1 dynlrb1,LOC106565026 other upstream 208279 11214752 ~ 11221540 (+)
unm_sa1614 LOC108254916,LOC108424671,LOC107566077,LOC107691346 other upstream 251346 11141236 ~ 11178473 (+)
G305727 NA other upstream 317301 11111739 ~ 11112518 (+)
G305955 iqsec1 other downstream 50624 11480669 ~ 11481100 (+)
G306103 NA other downstream 85014 11515059 ~ 11515813 (+)
G306480 tuba1c,LOC103148207,LOC106920718,LOC102311436,LOC101065103 other downstream 1027556 12457601 ~ 12462536 (+)
ippk ippk,LOC107755999,LOC106566243 other downstream 2244309 13674354 ~ 13692912 (+)
asic1b asic1,asic1b,LOC107721241,LOC107569540 other downstream 2749738 14179783 ~ 14476817 (+)

Expression


Co-expression Network