G306106


Basic Information

Item Value
gene id G306106
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 11542933 ~ 11543138 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU362777
cttttgctcacctaaaaattgggtggtctgccaccaaaggtgccacgttctaagttgtttaacacatctagatgtaaatatcaggaaatgaaagctgaaattctgatctatagtctcatattcatcttttgaacacaaacccaaatgtctttagtgtacagcaaaaacaatggCCTTGCTGTTCTAATAATTTCTGAGGAGACACG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU362777 True 206 lncRNA 0.37 1 11542933 11543138

Neighbor

gene id symbol gene type direction distance location
cfap92 NA coding upstream 269454 11256014 ~ 11273479 (+)
map1lc3a map1lc3a,LOC107551126 coding upstream 307672 11224148 ~ 11235261 (+)
fer1l4 LOC108254855,LOC108424672,LOC107727820,LOC107691347,LOC107749448,LOC107685659,LOC107551122,LOC105912144 coding upstream 402620 11107291 ~ 11140313 (+)
cpne1 LOC108254857,LOC108424674,LOC107727818,LOC107691350,LOC107685660,LOC107749446 coding upstream 435768 11079060 ~ 11107165 (+)
hdac11 hdac11,LOC107749433,LOC107727860 coding downstream 601 11543739 ~ 11583449 (+)
fbln2 fbln2,LOC108254974 coding downstream 65784 11608922 ~ 11671459 (+)
barx1 barx1,LOC107727794,LOC107685643,LOC107691398 coding downstream 250873 11794011 ~ 11797434 (+)
alpl alpl,LOC107691326,LOC107685635 coding downstream 524486 12067624 ~ 12096756 (+)
nmur3 LOC108281099,LOC108439501 coding downstream 633952 12177090 ~ 12185144 (+)
G305920 NA non-coding upstream 112888 11429819 ~ 11430045 (+)
G305903 NA non-coding upstream 132637 11409531 ~ 11410296 (+)
LOC117599893 NA non-coding upstream 187856 11352876 ~ 11355077 (+)
G305864 iqsec1,LOC107551128,LOC107749434 non-coding upstream 225433 11317187 ~ 11317500 (+)
G305865 NA non-coding upstream 230516 11310870 ~ 11312417 (+)
G306145 NA non-coding downstream 105162 11648300 ~ 11661421 (+)
G306199 NA non-coding downstream 209087 11752225 ~ 11754031 (+)
LOC113537887 NA non-coding downstream 294200 11837338 ~ 11843605 (+)
G306284 NA non-coding downstream 379331 11922469 ~ 11922676 (+)
G306286 NA non-coding downstream 381723 11924861 ~ 11925433 (+)
G306103 NA other upstream 27120 11515059 ~ 11515813 (+)
G305955 iqsec1 other upstream 61833 11480669 ~ 11481100 (+)
G305869 NA other upstream 216573 11325604 ~ 11326360 (+)
G305863 iqsec1,iqsec1b other upstream 227497 11314184 ~ 11315436 (+)
dynlrb1 dynlrb1,LOC106565026 other upstream 321393 11214752 ~ 11221540 (+)
G306480 tuba1c,LOC103148207,LOC106920718,LOC102311436,LOC101065103 other downstream 914463 12457601 ~ 12462536 (+)
ippk ippk,LOC107755999,LOC106566243 other downstream 2131216 13674354 ~ 13692912 (+)
asic1b asic1,asic1b,LOC107721241,LOC107569540 other downstream 2636645 14179783 ~ 14476817 (+)
gpd1b gpd1,gpd1b,LOC107698578,LOC107727040,LOC107721242,LOC107694423 other downstream 2971454 14514592 ~ 14524976 (+)
dag1 dag1,LOC107757307,LOC107592827,LOC108415278,LOC108415277 other downstream 4213752 15756890 ~ 15799890 (+)

Expression


Co-expression Network