G306470


Basic Information

Item Value
gene id G306470
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 12295369 ~ 12295729 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU363193
gtgaaaagctttctttctctataaatattatcaaataaCTTGTTTACCCAGACTTTGCCATTAAAACggacatttttcatattctctGTACATATTCTCTGAATCATCTCAGAGGTAATATTAGGACCCACATTCTTCCTAACAACTTTGTTTCAACTGCCAGATTTCTTGGCCAGTCGTTGGTCGTTCTTCTTGACATATCTTTCATAATCTGGCTTTCGCTAGAGAGTCTGGTACTTGTCTTCACTAAACTTGGCCGAGAACCATCTACAATCACAGGAAGTATTATTGCAAATGACCAGCCACAGGCTTTTCTCGTAGCCCGTCAGGAAATGTGCAAGATATCTCATTTAATTTCAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU363193 True 361 lncRNA 0.38 1 12295369 12295729

Neighbor

gene id symbol gene type direction distance location
nmur3 LOC108281099,LOC108439501 coding upstream 110225 12177090 ~ 12185144 (+)
alpl alpl,LOC107691326,LOC107685635 coding upstream 198613 12067624 ~ 12096756 (+)
barx1 barx1,LOC107727794,LOC107685643,LOC107691398 coding upstream 497935 11794011 ~ 11797434 (+)
fbln2 fbln2,LOC108254974 coding upstream 623910 11608922 ~ 11671459 (+)
hdac11 hdac11,LOC107749433,LOC107727860 coding upstream 711920 11543739 ~ 11583449 (+)
mcrs1 mcrs1,LOC107696040 coding downstream 121881 12417610 ~ 12427033 (+)
suox suox coding downstream 138780 12434509 ~ 12454321 (+)
prph prph coding downstream 178327 12474056 ~ 12485975 (+)
timeless timeless,LOC107689440 coding downstream 200580 12496309 ~ 12527278 (+)
LOC113538096 LOC108255238,LOC108431540,LOC105912282,LOC106565442 coding downstream 237507 12533236 ~ 12562741 (+)
G306452 NA non-coding upstream 5612 12284951 ~ 12289757 (+)
G306433 NA non-coding upstream 140819 12154295 ~ 12154550 (+)
G306432 NA non-coding upstream 143200 12143548 ~ 12152169 (+)
G306300 NA non-coding upstream 353076 11942035 ~ 11942293 (+)
G306295 NA non-coding upstream 357958 11937184 ~ 11937411 (+)
G306479 NA non-coding downstream 141470 12437199 ~ 12448374 (+)
G306503 NA non-coding downstream 276693 12572422 ~ 12573759 (+)
G306744 NA non-coding downstream 502019 12797748 ~ 12797982 (+)
G306756 NA non-coding downstream 608479 12904208 ~ 12904841 (+)
G306938 vgll4,vgll4b,LOC107750033,LOC107697562 non-coding downstream 900746 13196475 ~ 13283007 (+)
G306103 NA other upstream 779556 11515059 ~ 11515813 (+)
G305955 iqsec1 other upstream 814269 11480669 ~ 11481100 (+)
G305869 NA other upstream 969009 11325604 ~ 11326360 (+)
G305863 iqsec1,iqsec1b other upstream 979933 11314184 ~ 11315436 (+)
dynlrb1 dynlrb1,LOC106565026 other upstream 1073829 11214752 ~ 11221540 (+)
G306480 tuba1c,LOC103148207,LOC106920718,LOC102311436,LOC101065103 other downstream 161872 12457601 ~ 12462536 (+)
ippk ippk,LOC107755999,LOC106566243 other downstream 1378625 13674354 ~ 13692912 (+)
asic1b asic1,asic1b,LOC107721241,LOC107569540 other downstream 1884054 14179783 ~ 14476817 (+)
gpd1b gpd1,gpd1b,LOC107698578,LOC107727040,LOC107721242,LOC107694423 other downstream 2218863 14514592 ~ 14524976 (+)
dag1 dag1,LOC107757307,LOC107592827,LOC108415278,LOC108415277 other downstream 3461161 15756890 ~ 15799890 (+)

Expression


Co-expression Network