G306479


Basic Information

Item Value
gene id G306479
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 12437199 ~ 12448374 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU363205
aaaaaaggcctggcaaagcatctcaagggagcatttggtgatgtccatgggttccagacttcaggcagtcattgataGCAAAGggttgcatccaagtattaaaaataatcctaatatttatgattgttagtttgtccaatttcttttgagcctgtgaaattGGAGAGACTCTGcagaaaatggctgtaattcctacactacaccacaccacaatggattgaaatatatattctatctatctatctatctatctatctatctatctatctatctatttatctatct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU363205 True 285 lncRNA 0.35 2 12437199 12448374

Neighbor

gene id symbol gene type direction distance location
mcrs1 mcrs1,LOC107696040 coding upstream 10166 12417610 ~ 12427033 (+)
ephb2b ephb2b,LOC108255231,LOC108439490,LOC107727812,LOC107568432,LOC107691322,LOC101487531,LOC107685632,LOC102295218,LOC100712288 coding upstream 24104 12265705 ~ 12413095 (+)
nmur3 LOC108281099,LOC108439501 coding upstream 252055 12177090 ~ 12185144 (+)
alpl alpl,LOC107691326,LOC107685635 coding upstream 340443 12067624 ~ 12096756 (+)
barx1 barx1,LOC107727794,LOC107685643,LOC107691398 coding upstream 639765 11794011 ~ 11797434 (+)
prph prph coding downstream 25682 12474056 ~ 12485975 (+)
timeless timeless,LOC107689440 coding downstream 47935 12496309 ~ 12527278 (+)
LOC113538096 LOC108255238,LOC108431540,LOC105912282,LOC106565442 coding downstream 84862 12533236 ~ 12562741 (+)
pmela pmel coding downstream 136751 12585125 ~ 12595797 (+)
cdk2 cdk2,LOC107570445,LOC107683630 coding downstream 150695 12599069 ~ 12606053 (+)
G306470 NA non-coding upstream 141470 12295369 ~ 12295729 (+)
G306452 NA non-coding upstream 147442 12284951 ~ 12289757 (+)
G306433 NA non-coding upstream 282649 12154295 ~ 12154550 (+)
G306432 NA non-coding upstream 285030 12143548 ~ 12152169 (+)
G306300 NA non-coding upstream 494906 11942035 ~ 11942293 (+)
G306503 NA non-coding downstream 124048 12572422 ~ 12573759 (+)
G306744 NA non-coding downstream 349374 12797748 ~ 12797982 (+)
G306756 NA non-coding downstream 455834 12904208 ~ 12904841 (+)
G306938 vgll4,vgll4b,LOC107750033,LOC107697562 non-coding downstream 748101 13196475 ~ 13283007 (+)
G306937 NA non-coding downstream 840415 13288789 ~ 13293439 (+)
G306103 NA other upstream 921386 11515059 ~ 11515813 (+)
G305955 iqsec1 other upstream 956099 11480669 ~ 11481100 (+)
G305869 NA other upstream 1110839 11325604 ~ 11326360 (+)
G305863 iqsec1,iqsec1b other upstream 1121763 11314184 ~ 11315436 (+)
dynlrb1 dynlrb1,LOC106565026 other upstream 1215659 11214752 ~ 11221540 (+)
G306480 tuba1c,LOC103148207,LOC106920718,LOC102311436,LOC101065103 other downstream 9227 12457601 ~ 12462536 (+)
ippk ippk,LOC107755999,LOC106566243 other downstream 1225980 13674354 ~ 13692912 (+)
asic1b asic1,asic1b,LOC107721241,LOC107569540 other downstream 1731409 14179783 ~ 14476817 (+)
gpd1b gpd1,gpd1b,LOC107698578,LOC107727040,LOC107721242,LOC107694423 other downstream 2066218 14514592 ~ 14524976 (+)
dag1 dag1,LOC107757307,LOC107592827,LOC108415278,LOC108415277 other downstream 3308516 15756890 ~ 15799890 (+)

Expression


Co-expression Network