G306480 (tuba1c,LOC103148207,LOC106920718,LOC102311436,LOC101065103)


Basic Information

Item Value
gene id G306480
gene name tuba1c,LOC103148207,LOC106920718,LOC102311436,LOC101065103
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 12457601 ~ 12462536 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU363207
acataatattttatactgGAACCTTTATGGAGATGATGCCTTGGGCAATCTTTCCAACAAattaagtattaaaatcatgTGAATACAATACTTAATTTAGAATAACCATTAAACCACTTTATAATACTTTAATACAAAATTTGTAGATTTTGAGTAAGATTACAAagtaatctgtttatttaatactcattatattttatattaatttattcatatttagtagccgctttatcctggtcaggattgtaGAGAAGCTGGAGCCGATCCCAGCAACACTGGGAGGCCAATCCGTCACAGGGCACCATTGACatttaggggcaatttagcacagcATCTGCCTACCTGCATGGTTTTTGGACAatgggaggaaatcagagaacccagaaaaaaaagcaaaaaaaatgtacaaacatGAGAACATGCAAATCTTCCTACATACAATTTAATGTCActaatacaatatttaattaaaacaaaatcattatataatcttaaaatacttttaaatgtatattgttatgattacagtcattttattattttttaatgttacattgactttattattattaaaaaaatataatatttttgtttcgtTTAGTAAGTTTAGCTACGTCATTACACTGCACATTACTTTTATTCATTCCATGTAATTGTCATTATTTCATAATGtatgactttttaattttaattttaggcAGAGATTTTGTGTTAAGCCTACATCCTTGTCGAGAGAGATTTATTCATTcaacttttaaattaaaataccaaatttatttattttttgcacttgGTGCAGGTGTTGGAAACCAAATGTGTTCTTAAATACCACCGATAATACAAAATGATTTTCACTCTGAGTAACGGGACAAAACAGACAGTACACACCTGAATTTTGACTCAATAATTTATTGCGCGTCACAGTCAGAAGACGATGGAATGTGTGGTTCATAAGAGTGCAGGAGTGTACCATTAAGTATGGCACCATGTGTTCTCGAGACACTGCCAGACTTCAACAGACAAAGCACACGTACACATAGAAAGCAAGATGGTGCTCGCAATGTAAGAACGATCTCTATGCTAGTGAGAATGCTAAATCTTTGACGTGACAAGCATACTGGCAATTTAATAGGGAGAAACACTCTTAAtactcctctccctcctcctctccttctccttcaaTGGAATCAACACCAACTTCCTCATAATCCTTCTCCAGGGCAGCCATGTCCTCTCTGGCCTCAGAGAACTCGCCCTCCTCCATACCCTCTCCTACATACCAGTGCACAAAGGCACGCTTAGCATACATCAGGTCGAACTTGTGGTCGAGCCTGGCCCAGGCCTCTGCAATAGCTGTGGTGTTGCTAAGCATGCACACAGCTCTCTGGACCTTGGCGAGGTCTCCACCAGGCACCACAGTGGGTGGCTGGTAGTTGATACCAACTTTAAAACCAGTTGGGCACCAGTCCACAAACTGGATGGTACGCTTGGTCTTGATGGTGGCAATGGCAGCGTTGACATCTTTAGGTACAACGTCACCACGGTACAGCAAGCAGCAGGCCATGTACTTGCCATGACGTGGGTCGCATTTGAccatctgattggctggctCAAAGCAAGCATTAGTGATCTCAGCCACTGAAAGCTGCTCGTGGTAAGCTTTCTCAGCTGAGATCACTGGGGCGTAGGTGGCCAGAGGGAAGTGGATGCGAGGGTAGGGCACCAAGTTGGTCTGGAACTCAGTCAGATCAACATTCAGGGCACCATCAAATCGGAGGGAGGCAGTGATTGAGGACACAATCTGGCTGATCAGCCGGTTAAGGTTGGTGTAGGTAGGACGTTCGATATCAAGGTTTCTACGGCAGATGTCATAGATGGCCTCGTTATCGACCATGAAAGCACAGTCAGAGTGCTCGAGAGTGGTGTGAGTGGTCAGGATGGAGTTGTAGGGCTCCACCACAGCGGTGGACACCTGTGGAGCTGGGTAGATGGAGAACTCCAGCTTAGACTTCTTGCCATAGTCAACAGAAAGACGCTCCATCAGCAAGGAGGTGAAACCAGATCCAGTTCCACCTCCAAAGCTGTGGAAGACCAGGAAGCCCTGGAGACCAGTGCACTGGTCAGCCTTTTGCGAATTCTGTCAAGCACCAGGTCGATGATCTCCTTGCCGATGGTGTAATGTCCACGAGCGTAGTTGTTGGCTGCATCCTCCTTTCCAGTGATCAGCTGCTCAGGGTGGAAGAGCTGGCGGTAAGTGCCAGTGCGAACCTCGATCACAGtgggctccagatccacaaACACTGCCCTGGGGACGTGCTTGCCAGCTCCTGTCTCACTGAAGAAGGTGTTGAAGGAATCGTCACCTCCACCGATGGTTTTGTCACTAGGCATCTGTCCATCAGGCTGAATACCGTGCTCAAGGCAGTACAGCTCCCAGCAGGCATTTCCAATCTGGACACCAGCCTGGCCAACGTGGATGGAGATACACTCACGctgcaggaaaagaaaaaggcaagttacagtagtagtattagtaattAATTACAACAAACCACATATTTAGAACAGAGTCAACATAAGCAAGGTTCTTTAGACCTGCCACACCTTTTGAAACTGGCAAATGAAATGGTGAAAAAAGCAATGCATGCCCACAAAAACCACACCCTTGTTTGTACTTTGTAAGCACCATTTCAGAAATTAGAAACTGCTGAACAGCAAAAATGTATGAGACactgctttcaaaaaaaaaaaaagcatgcatcACAGCATGAGCAAGTAcaaacagtgacaaaaaaaaaatcaaaattataGGCTTGTAATGCTTTTGTGAGAATTTGTATCTTCAGTGATGAACGTCGTAATATAATATGGTAAATAGTCTAGAAATGTTGAAAccatgtgtatgtttttattaatatatatataatattaatatgtaatgaTCAGGTTGTTTAACACATAGACACCTAGACGGACACCCTGACCTTGAACACCGACTCTGAGCTCTCAAAGGGCTTTTCTTTACGGGGAACACACTTTTACAAATGTATCATGCAATCCGAAATTTGTCTGTTAAATCAGGACCAGTGCTCGGTGCAGTTACATGAGAAGTAGGTCTAAGCTCGTGAAGGGCAGGTGTGGATCCCTGAATGTGCCGCAGAGGGCTGGTCTAGCCTAGATCACGCCACTTATCCCCCCCCAGCTCCCTCCCTCTTTTTCCACAgtcttctctctccttccctcttcTCCTCCCCCAGTCTCTCCATCTTTGACTCCACCCGGCTGCTACTGTGGGATTTGCACATTTCCTGCCCGAGTCGTGCCGTTGCCTGGCAACAGGACTTCAGATTGAAATGGACTGTGACAACTGGCATTGTCTATGTGTAAATAGTCAGGCTTTATACGAAATTCTCCGTGGTTGTTGTATCCCATTAGAAACTGCTTTTCATGTAGGACACAACGCATAGAACTATAACAGATAAGGACACCTATCCTCCCATCTGTTCAGTGACAAAGGGCACTTGGGGGCGATTTCTGCCTTTGTTACCATCACCACCCCCCTCCCCCGCCCTTCATGGGCTCAGCTGGGTGCCAGGGCCATCACCCCCATTCCTCTATAAGGAACTAGTACAGAAGCTAATCAGATTTACATACAAATCTCCTGATGGCGGAACCAGGAAAGCCACATAGTCGTTTACATCACAGTTAGTCAGTGTCTCCACACGAACCCTACTGAAGCTCACCAAGTGCTGCTAAAATGTAGGTCAGAACTAATACAAAGAATAAATACTCATTTCAATATTCAATGTGTATTAACTGTAGCGGCGAAAAACGGAACCACATCTCAGCCCGATGTCCATCTTGGCCTTTATGACTGTAGCGAAGATTTCGGCACGTCAGAGACAAAGGCGGGAAGCGCGCGCCGACACATTTCGCCTACGTCAGCCCCAGTCAATCttaacagaaaagaaaatggccGTAAATCCGATTAAACCAGCGATTAATCGTTTAGACTCAACTTAATGTTAAGGCAATGTATCATATGTTTGCTCTCAGGAGTTTTGTATGCAGTTATGGTCTTTTGTGTGATATCTTGCTCGTTTGAAACCGCTAAACGTTTGGTTTCTTCCCGCGCCCGCCAAGCACGAGGAGCATCAGCCGCAGCACAACCTGCGCAGTCTACATGCTGTTCAATTTAATTACAACAGTGACACGAATACCGCGTAAATAATGCGCAGACCTCAATGTTATGAGTCACTTTTTATGGGCTGTAATTTTTATGACGAATATAAAAGCATTGAAGACCGCTATTCACACGGACCTGTTTCAAATAAGtaacaacagaaaataaattatgtacaGTTTTGTTCTAAATATTACTTACCATTTTGATACGTATGAAAAGAAATCGGCTCGGAGGAAGAagagagttttgtgggtttcaCTCGCCGGTGAAGTTCGTTACCTTGCTCGACAGTTAAGAGTCGATGTAGTAACTACTTTAGTGTCCCAGTGGCGCCCCTCTTTATAAAGGCCCGCGGTGCTGAAGGGGCCGAGCTCATGATTAAACCATCACTCCTGGCCTTATGCGCGGGTTGCCAGATCGATATATTCTCACCTCCAACAACCCGTTCTTTGTGTAGACCTCTCCTAAAGTCGGGTTTACACTGCACGGTTTCGGCCTGACTTTGCTGAGTTGAGATCTGTGGTCTTAGATTACACAAGGTGACTGAT

Function

symbol description
tuba1c Predicted to enable GTP binding activity. Predicted to be a structural constituent of cytoskeleton. Predicted to be involved in microtubule cytoskeleton organization and mitotic cell cycle. Predicted to act upstream of or within microtubule-based process. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm and microtubule. Is expressed in central nervous system; forebrain; nervous system; neurons; and peripheral nervous system. Orthologous to several human genes including TUBA1B (tubulin alpha 1b).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU363207 True 4734 TUCP 0.43 3 12457601 12462536

Neighbor

gene id symbol gene type direction distance location
suox suox coding upstream 3280 12434509 ~ 12454321 (+)
mcrs1 mcrs1,LOC107696040 coding upstream 30568 12417610 ~ 12427033 (+)
ephb2b ephb2b,LOC108255231,LOC108439490,LOC107727812,LOC107568432,LOC107691322,LOC101487531,LOC107685632,LOC102295218,LOC100712288 coding upstream 44506 12265705 ~ 12413095 (+)
nmur3 LOC108281099,LOC108439501 coding upstream 272457 12177090 ~ 12185144 (+)
alpl alpl,LOC107691326,LOC107685635 coding upstream 360845 12067624 ~ 12096756 (+)
prph prph coding downstream 11520 12474056 ~ 12485975 (+)
timeless timeless,LOC107689440 coding downstream 33773 12496309 ~ 12527278 (+)
LOC113538096 LOC108255238,LOC108431540,LOC105912282,LOC106565442 coding downstream 70700 12533236 ~ 12562741 (+)
pmela pmel coding downstream 122589 12585125 ~ 12595797 (+)
cdk2 cdk2,LOC107570445,LOC107683630 coding downstream 136533 12599069 ~ 12606053 (+)
G306479 NA non-coding upstream 9227 12437199 ~ 12448374 (+)
G306470 NA non-coding upstream 161872 12295369 ~ 12295729 (+)
G306452 NA non-coding upstream 167844 12284951 ~ 12289757 (+)
G306433 NA non-coding upstream 303051 12154295 ~ 12154550 (+)
G306432 NA non-coding upstream 305432 12143548 ~ 12152169 (+)
G306503 NA non-coding downstream 109886 12572422 ~ 12573759 (+)
G306744 NA non-coding downstream 335212 12797748 ~ 12797982 (+)
G306756 NA non-coding downstream 441672 12904208 ~ 12904841 (+)
G306938 vgll4,vgll4b,LOC107750033,LOC107697562 non-coding downstream 733939 13196475 ~ 13283007 (+)
G306937 NA non-coding downstream 826253 13288789 ~ 13293439 (+)
G306103 NA other upstream 941788 11515059 ~ 11515813 (+)
G305955 iqsec1 other upstream 976501 11480669 ~ 11481100 (+)
G305869 NA other upstream 1131241 11325604 ~ 11326360 (+)
G305863 iqsec1,iqsec1b other upstream 1142165 11314184 ~ 11315436 (+)
dynlrb1 dynlrb1,LOC106565026 other upstream 1236061 11214752 ~ 11221540 (+)
ippk ippk,LOC107755999,LOC106566243 other downstream 1211818 13674354 ~ 13692912 (+)
asic1b asic1,asic1b,LOC107721241,LOC107569540 other downstream 1717247 14179783 ~ 14476817 (+)
gpd1b gpd1,gpd1b,LOC107698578,LOC107727040,LOC107721242,LOC107694423 other downstream 2052056 14514592 ~ 14524976 (+)
dag1 dag1,LOC107757307,LOC107592827,LOC108415278,LOC108415277 other downstream 3294354 15756890 ~ 15799890 (+)
amigo3 amigo3 other downstream 4026825 16489361 ~ 16501684 (+)

Expression


Co-expression Network