G306959


Basic Information

Item Value
gene id G306959
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 13331687 ~ 13334245 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU363757
CCATTGTAAGTCTCAGGTACCTTGCTGTACGAGCAGGCCGCAGTCTGGGTCTTGAGCGAGCTGCAGCAGGATCTCCTCCACGTCACGGTTCTTCCCTGGAGGATCCACCAGCCGTGTGATCTGCTGCTGCAGAGTGCGAGGCAGAGCCATCAGCTGGGTAAACTGGCCCTCTGGACTCTTATCTCCAGCTTCCCCTGCTGCAGCTTGTAGACCACCTGCGGACATTCTTGGAGAATATTATTATACAACATTCGGAAGTGCTCCATGTTTTCCTTCACAATGTTGGAAACTTTGGATTTATCCTCGCCGATCACCATCCTGAAATCCCCTAAAAGACATTACATAATCACAGGAGGCACTTCAGGATTAAACAGCCACGATTCTACGATGCAAAAATTAAAGTAAGTCAACTAAAAGCGTGGCTGCATTTTGGACTGTGCTTTTAAaaccatttgctgttataatgaaagTGATTTCTTTAGTTGGGGCATGGTTCCTGGCATCAGTGTAAGCCAACTCAAAAAATTTCCTCTAGATGCACCAATCAGCTTCCTACGGCAAAGCTGTTGTGTAGCTCTGCATTTTAGTTCATGAAATTAACAAAATTGGTTGAAACGTTGAAATGAAAATTCTCTCCAAAATGCTAATATTTTGTTAGTGCAGCACTTCACGTCCTAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU363757 True 680 lncRNA 0.45 2 13331687 13334245

Neighbor

gene id symbol gene type direction distance location
atg7 atg7,LOC107697561,LOC107750032 coding upstream 52586 13167155 ~ 13279101 (+)
hrh1 hrh1 coding upstream 169995 13140570 ~ 13161692 (+)
slc6a1b slc6a1,slc6a1b,LOC107670967,LOC107746710,LOC107697564,LOC107750027 coding upstream 257929 13059983 ~ 13073758 (+)
slc6a11b slc6a11,LOC107750026,LOC107697565,LOC107561801 coding upstream 320628 12975527 ~ 13011059 (+)
atp2b2 atp2b2,LOC107570616,LOC107561799,LOC102776443,LOC106566233,LOC107746712 coding upstream 372581 12789492 ~ 12959106 (+)
syn2b syn2,LOC107758022 coding downstream 24679 13358924 ~ 13425482 (+)
pparg pparg,LOC107742034,LOC107667870,LOC107571218 coding downstream 106414 13440659 ~ 13476589 (+)
tsen2 tsen2 coding downstream 147166 13481411 ~ 13495985 (+)
mkrn2 mkrn2 coding downstream 174164 13508409 ~ 13521412 (+)
cnbpb cnbp,cnbpb,LOC108254964,LOC108431552,LOC106566283,LOC105905103,LOC107742027 coding downstream 230824 13565069 ~ 13568961 (+)
G306937 NA non-coding upstream 38248 13288789 ~ 13293439 (+)
G306938 vgll4,vgll4b,LOC107750033,LOC107697562 non-coding upstream 48680 13196475 ~ 13283007 (+)
G306756 NA non-coding upstream 426846 12904208 ~ 12904841 (+)
G306744 NA non-coding upstream 533705 12797748 ~ 12797982 (+)
G306503 NA non-coding upstream 757928 12572422 ~ 12573759 (+)
G307079 NA non-coding downstream 16208 13350453 ~ 13350680 (+)
G307154 NA non-coding downstream 167221 13501466 ~ 13501831 (+)
G307161 NA non-coding downstream 187764 13522009 ~ 13524054 (+)
LOC117599900 NA non-coding downstream 606181 13940426 ~ 13960190 (+)
G307272 NA non-coding downstream 669363 14003608 ~ 14003831 (+)
G306480 tuba1c,LOC103148207,LOC106920718,LOC102311436,LOC101065103 other upstream 869151 12457601 ~ 12462536 (+)
G306103 NA other upstream 1815874 11515059 ~ 11515813 (+)
G305955 iqsec1 other upstream 1850587 11480669 ~ 11481100 (+)
G305869 NA other upstream 2005327 11325604 ~ 11326360 (+)
G305863 iqsec1,iqsec1b other upstream 2016251 11314184 ~ 11315436 (+)
ippk ippk,LOC107755999,LOC106566243 other downstream 340109 13674354 ~ 13692912 (+)
asic1b asic1,asic1b,LOC107721241,LOC107569540 other downstream 845538 14179783 ~ 14476817 (+)
gpd1b gpd1,gpd1b,LOC107698578,LOC107727040,LOC107721242,LOC107694423 other downstream 1180347 14514592 ~ 14524976 (+)
dag1 dag1,LOC107757307,LOC107592827,LOC108415278,LOC108415277 other downstream 2422645 15756890 ~ 15799890 (+)
amigo3 amigo3 other downstream 3155116 16489361 ~ 16501684 (+)

Expression


Co-expression Network