gpd1b (gpd1,gpd1b,LOC107698578,LOC107727040,LOC107721242,LOC107694423)


Basic Information

Item Value
gene id gpd1b
gene name gpd1,gpd1b,LOC107698578,LOC107727040,LOC107721242,LOC107694423
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 14514592 ~ 14524976 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU364869
TCTGCAGTGGAGCTTCATGAGTGGGTCGCGTTGAGCACAAAGCAGCTCCTCCAAACAGCCTGGAAGCTCCAGCACTACAGAATGGCACCTAAGAAAGTCTGTCTTATTGGCTCTGGCAACTGGGGCTCTGCTATTGCCAAGATTGTGGGCACCAACACTGCCAAGTATGCGACATTTGAGGACACGGTGAACATGTGGGTGTTTGAAGAAATAGTGAACGGACGCAAACTCACAGAAATTATCAACACTGAGCATGAGAATGTCAGATACCTGCCAGGACACAAGCTGCCCTCTAACGTGGTGGCTGTTCCAGATCTATTAGAAGCCGTGAAAGGGGCCGACATTCTTATCTTTGTAATCCCGCACCAGTTTGTAAAGAAAATTTGCGACACAATCAAAGGTCACATCAAGGCGGATGCAGTGGGGATGTCCCTGATCAAGGCAAGCTCTCAGACTGCCATGTggaatttttatatattcagtTATCTAACTGCTTA
>XM_026932839.2
CATGGACTATAAATACGCTCTGCAGTGGAGCTTCATGAGTGGGTCGCGTTGAGCACAAAGCAGCTCCTCCAAACAGCCTGGAAGCTCCAGCACTACAGAATGGCACCTAAGAAAGTCTGTCTTATTGGCTCTGGCAACTGGGGCTCTGCTATTGCCAAGATTGTGGGCACCAACACTGCCAAGTATGCGACATTTGAGGACACGGTGAACATGTGGGTGTTTGAAGAAATAGTGAACGGACGCAAACTCACAGAAATTATCAACACTGAGCATGAGAATGTCAGATACCTGCCAGGACACAAGCTGCCCTCTAACGTGGTGGCTGTTCCAGATCTATTAGAAGCCGTGAAAGGGGCCGACATTCTTATCTTTGTAATCCCGCACCAGTTTGTAAAGAAAATTTGCGACACAATCAAAGGTCACATCAAGGCGGATGCAGTGGGGATGTCCCTGATCAAGGGTGTTGATGAGGGTCCAGATGGGCTGAAACTCATTTCTGATGTCATCAAGGAGAATCTGGGTATCACTATGACTGTGCTAATGGGAGCCAACCTGGCCAATGAGGTGGCTGAGGGCAAATTCTGTGAGACCACAATCGGCTGTAAAAGCAAAGAACACGGGCCACTGCTGAAGGAACTCATGCAGACAAAGAACTTCCGGGTTACTGTCGTGGAAGAGTCAGATGTTGTAGAGATTTGTGGAGCTTTGAAGAACATTGTGGCAGTTGGCGCAGGTTTCTGTGACGGCCTTGGCTCTGGTGATAACACCAAGGCAGCAGTAATCCGTTTGGGTCTGATGGAGATGATTGCATTTGCACGGATCTTCTGCACGGCCAGTTCTGTCTCCCCTGCCACCTTCCTGGAGAGCTGCGGCGTCGCTGACCTCATCACCACCTGCTATGGAGGACGCAACCGTAAAGTTGGTGAGGCTTTCGCCAAAACCGGCAAGTCAATTGAAGAGCTGGAGAAGGAGATGCTGAATGGGCAGAAGCTTCAGGGTCCAGCCACTGCAGCTGAAGTGAACCACATTCTCAAGCACAAAAACATGGTGGACAAATTTCCTCTGTTCAACGCAGTGTATCAGATCTGCTTCCAGGGCCATCCAGTGAAAGAGTTCATCAGCTGCTTGCAGAATCACCCAGAACACATGTAACTCATTGACCAACCTGCAGCATGATGGGGTCAGTCTAGCTAAAAAGCTACTACAAATCTAGTTGGGGAGATGGGGCTGTTCACTGTGCCTATATTTCTTACTGAGGAAAGAAGAATCTGAAGTAGGGCTGATCTGAGGATGTTCTTGCCAAACTTCATTTCAAAACGCCACACCTCGAAAAAGCCTTACTTCAACATTCTACCATGTCTAGATCACATTGTTCGTGTTGTTAAGGATGTCAGATTTTAACTAAACCTaagaataaatgttttttgtaaatgtgtcAGAGATATGTCCTAACTGTCTTCATGTAGCTGGTCTTCAGTGAGTAGGCTGGCTTGTAACACTATTGTGTGTGCTAACAGAATGTAAAGGAGTGCGGATTAAAAGTGCCTTAAGTGGTTTTTACCTGAATATTCATCcatatttgttttctgttaaaaagaaaactcCCAAATAATTTTACACACTGACGAGTACAACGAGTACATCCTGCTTTTACAATCTGGTTTGTTTTTGATTTGATGTGTATGGctccaaacatgacatactgtcattttgaaataaattatttaaactgaA

Function

symbol description
gpd1b Predicted to enable glycerol-3-phosphate dehydrogenase [NAD+] activity. Predicted to be involved in NADH oxidation and glycerol-3-phosphate metabolic process. Predicted to act upstream of or within carbohydrate metabolic process and glycerol-3-phosphate catabolic process. Predicted to be part of glycerol-3-phosphate dehydrogenase complex. Predicted to be active in cytosol. Is expressed in several structures, including intermediate cell mass of mesoderm; neural plate; notochord; ventral mesoderm; and yolk syncytial layer. Orthologous to human GPD1 (glycerol-3-phosphate dehydrogenase 1).
gpd1 Predicted to enable glycerol-3-phosphate dehydrogenase [NAD+] activity. Predicted to be involved in NADH oxidation and glycerol-3-phosphate metabolic process. Predicted to act upstream of or within several processes, including cellular response to cAMP; gluconeogenesis; and glycerophosphate shuttle. Located in extracellular exosome.

NR:

description
PREDICTED: glycerol-3-phosphate dehydrogenase [NAD(+)], cytoplasmic isoform X1

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0046168 glycerol-3-phosphate catabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0009331 glycerol-3-phosphate dehydrogenase complex cellular_component
GO:0042803 protein homodimerization activity molecular_function
GO:0051287 NAD binding molecular_function
GO:0004367 glycerol-3-phosphate dehydrogenase [NAD+] activity molecular_function

KEGG:

id description
K00006 GPD1; glycerol-3-phosphate dehydrogenase (NAD+)

RNA

RNA id representative length rna type GC content exon number start site end site
TU364869 False 497 TUCP 0.47 3 14514610 14521147
XM_026932839.2 True 1734 mRNA 0.46 8 14514592 14524976

Neighbor

gene id symbol gene type direction distance location
smarcd1 smarcd1,LOC107694342 coding upstream 857 14495263 ~ 14513735 (+)
gls2b gls2b,LOC108255189,LOC108431573 coding upstream 382585 14114476 ~ 14132007 (+)
rdh5 rdh5,LOC107573570,LOC107586996,LOC107653177,LOC107745400 coding upstream 402082 14102055 ~ 14112510 (+)
bloc1s1 bloc1s1 coding upstream 418573 14091935 ~ 14096019 (+)
rbck1 rbck1 coding upstream 434457 14065621 ~ 14080135 (+)
cers5 cers5,LOC107698577,LOC107590873,LOC107694004,LOC107718462 coding downstream 7734 14532710 ~ 14573427 (+)
LOC113537860 bcdin3d coding downstream 51358 14576334 ~ 14579348 (+)
LOC113538112 LOC108255148 coding downstream 74281 14599257 ~ 14610164 (+)
ccdc51 ccdc51 coding downstream 88787 14613763 ~ 14615894 (+)
mcm2 mcm2,LOC107718478 coding downstream 92012 14616988 ~ 14628607 (+)
G307588 NA non-coding upstream 366147 14148141 ~ 14148445 (+)
G307281 NA non-coding upstream 417806 14096270 ~ 14096786 (+)
G307293 rpp14,LOC103374991 non-coding upstream 456390 14051835 ~ 14058202 (+)
G307262 pdhb,LOC107721006 non-coding upstream 498198 14015162 ~ 14016394 (+)
G307272 NA non-coding upstream 510761 14003608 ~ 14003831 (+)
LOC117599878 NA non-coding downstream 58591 14583567 ~ 14590821 (+)
G307971 NA non-coding downstream 64049 14589025 ~ 14589232 (+)
G307976 NA non-coding downstream 73417 14598393 ~ 14598612 (+)
G307997 NA non-coding downstream 175021 14699997 ~ 14780758 (+)
LOC113537908 NA non-coding downstream 235855 14760831 ~ 14763174 (+)
asic1b asic1,asic1b,LOC107721241,LOC107569540 other upstream 37775 14179783 ~ 14476817 (+)
ippk ippk,LOC107755999,LOC106566243 other upstream 821680 13674354 ~ 13692912 (+)
G306480 tuba1c,LOC103148207,LOC106920718,LOC102311436,LOC101065103 other upstream 2052056 12457601 ~ 12462536 (+)
G306103 NA other upstream 2998779 11515059 ~ 11515813 (+)
G305955 iqsec1 other upstream 3033492 11480669 ~ 11481100 (+)
dag1 dag1,LOC107757307,LOC107592827,LOC108415278,LOC108415277 other downstream 1231914 15756890 ~ 15799890 (+)
amigo3 amigo3 other downstream 1964385 16489361 ~ 16501684 (+)
LOC113537865 LOC108280979 other downstream 2736003 17260979 ~ 17263663 (+)
snrpe snrpe other downstream 4162421 18687397 ~ 18692014 (+)
G310681 LOC108254836 other downstream 4562049 19087025 ~ 19087806 (+)

Expression


Co-expression Network